Trifolium pratense (red clover): 123893635 Help Entry 123893635         CDS       T08949                                  Name (RefSeq) symplekin isoform X1   KO K06100   symplekin Organism tpra  Trifolium pratense (red clover) Pathway tpra03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:tpra00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     123893635  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:tpra03021]     123893635    03019 Messenger RNA biogenesis [BR:tpra03019]     123893635 Transcription machinery [BR:tpra03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      123893635 Messenger RNA biogenesis [BR:tpra03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      123893635     U7-dependent histone pre-mRNA processing factors      123893635 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N HEAT_2 Motif Other DBs NCBI-GeneID:  123893635 NCBI-ProteinID:  XP_045799356 LinkDB All DBs Position LG7:2877321..2898660 Genome browser AA seq 1332 aa AA seqDB search MAAPPTKDQVLSLLAAANNHGDISVKTNSLKQAKDLLLSIDPSLAADLFPYLLDLQSSHE SLVRKLLIQIIEEIGFRAVEHSPALISSLLTFLRDSDVTVVKQSIISGTNIFCACFEELI LQFQQCGKVERWLEEIWMWMLKFKEAVFEIALEGGSYGIKLLALKFLEIFVLLFTSDISD PDKSATEGVRQAVNISWLVGSHPVLDQMVLMTEANRTIGILLKLLQCTGNLPGCLTIAVV NCLAAIARKRSQHYDTIFSELLDFDPNVQTVKGCHVVSVQYSLRTAFLGFLRCTYSPIIE SRERLIRSLRAMNAGDAADQVIRQVDKMIKSGDRFTRDVRASKDDQPSIQLPISGELSRK RPVPHDNEQLANGHDASAKRIRSGPDSDFTLPAQINDSGRDLSSINGVSPNAPVPETELT AVEQMIAVIGALIAEGERGAKSLEILISQIHPDLLADIVVANMKHLPKAPPPLARLENPS VTRQVASQVSQSQVIAAPASTSSVQSLSASAQAQFPSTTSTATTSSASDTSNLSNLPADS KRDPRRDPRRLDPRRGAITPGGAAISVTDDTCATKLESEDPVSFTKPASHHVASTDDDTQ SDLTIKLKNEDMISEGPPISGPDRVTPKTEVLERPVDHQVMETNVSLDPGVSSTNSIDED PSTVNLLDDTETNGTDSSSIFEFDQFYLDVQVSSTSEDTCLELPQLPPYIQLSQEHESKV KHMAISHIIESYTHLHGAECQQFCMPLLARLVAQIDGDNVITGMLQKHILEDHWRKGHEL VLHVLYHLHSLMIMDSAGNSSSSVLYDNFLLGVAKTLLDSFPATDKSFSRLLSEVPFLPE SALKVLEDLCYADVIDHDGKIIRDIERVTQGLGSIWSLILGRPQNRQGCLGIALKCAVHP QDEIRAKAIRLVTNKLFQLSYIAEDVVKFATKMLLSAVDHEASDAAQSGPTEQRMEVESL DISGTSQAFESENDTTRVAKPTIQSVSSISFSEAQRLISLFFALCTKKPSLLQIVFDVYG QASRTVKQAFHRHIPNLVRALGQSYSELLHIISDPPKGSENLLTLVLQILTQDTTPSSDL ISTVKHLYETKLRDVTILVPLLSSLSKTEVLPIFPRLVDLPLEKFQRALAHILQGSAHTG PALTPVEVLVAIHGIVPEKDGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLP LLFMRTVIQAVDAFPALVDFVMEILSKLVTRQVWRMPKLWVGFLKCVYQTQPRSFHVLLQ LPPQQLESALNRHANLRVPLASYANQPTVKSSLSRSTLAVLGLATETHVQQHLPTPMHHS ETSTSVSGATLT NT seq 3999 nt NT seq  +upstreamnt  +downstreamnt atggccgcacctccaaccaaagaccaagtcctctctctcctcgccgccgccaataaccac ggtgacatctccgtcaaaaccaattccctaaaacaagccaaagaccttcttttatccatc gatccttctctcgctgctgaccttttcccttatctccttgaccttcaatcttctcatgaa agcctcgttcgcaaattgcttatacagataattgaggagattggttttagagcagttgaa cattctcctgcattgatatcttcattattaacatttttacgagacagtgatgtaactgtt gtaaaacagtctattattagtggcactaatatattctgtgcttgttttgaggagttgatt ctgcagtttcaacaatgtggcaaagtagagaggtggttagaagagatttggatgtggatg ctaaagttcaaggaggctgtttttgagattgctcttgagggtggttcttatggaataaag ttgctggcactgaaattcttggagatttttgtattactttttacatctgacatcagtgat cctgacaaatcagccaccgaaggagtccgacaggctgttaatatctcatggttggtgggt tctcaccctgttctcgatcaaatggtgcttatgacagaggcaaataggacaattggcatt ttattaaaattgttgcagtgcactggcaatctccctggttgcttgacaattgctgttgtg aattgtttagcggccattgcaaggaaaaggtcacaacactatgataccatcttttcagaa ttgcttgattttgatccaaatgttcaaacagtgaaaggatgtcatgttgtcagtgttcag tactctttaagaacagcttttttgggctttctaagatgcacttattctccgataatagag tcaagagaaagactgataaggagcctgcgagctatgaatgcgggggatgctgctgatcag gtaattcggcaagtagacaaaatgattaaaagtggtgatcgctttacccgtgatgttcga gctagcaaggatgatcaaccatcaattcagttgcccatttctggggaattatctaggaaa agacctgttcctcatgataatgaacaattggccaatggccatgatgccagcgctaagagg attcgttctggtcctgactctgactttactttacctgctcaaataaatgattcgggccgg gatcttagctccattaacggagtgtcacctaatgctcctgttcctgaaactgaactaact gccgtggagcaaatgattgctgttattggtgctttgattgctgaaggagaaagaggcgcc aaatctcttgaaatacttatttcacagattcatcctgatctgttggctgatattgtcgta gctaatatgaagcacttgcctaaggcacccccaccactagcaaggcttgaaaatccatca gtaactcgccaagtagcttcccaagtcagtcaatcgcaggttatagcagcacctgcttca acgagttctgtccaatccttgtctgcctctgcccaagcacaattcccttcaactacgtcc actgctactacctcatcagcatccgacacctccaacctcagtaaccttcctgccgattct aaacgtgatccacgccgggatccccgtcgtctggatccacgacgtggagcgataactcct ggaggagcagctatctcagttacagatgatacttgtgccacaaaactagaatccgaggat cctgtgtcttttactaaacctgcgtcacatcatgttgcaagcactgatgacgatacccaa tcagatttaacaatcaaactaaaaaatgaggatatgatctctgaaggtcctccaatttca ggacctgatcgggttactcccaaaacagaggttcttgaaagacctgtagatcaccaggtt atggaaacaaatgtttctttggatcctggggtctcttccaccaattcaatagatgaggat ccgagtacagtaaatcttttggatgatactgaaacaaacgggacagattcatcatctatt tttgagtttgatcagttttatcttgacgttcaagtgtcatccacatcagaagatacctgt ttggagttgccacagcttccaccatatattcaactatcccaagaacatgaaagtaaggtg aaacacatggctattagccatataatagagtcatacacacatttgcacggggcagaatgt cagcagttttgcatgccactacttgcaagacttgtagctcagattgatggcgataatgtg atcactgggatgctgcaaaaacacattctggaagaccactggcgaaagggccacgaactt gttctgcatgttctgtaccatctccattccttgatgataatggattcagctggaaactct tcatcttctgttttatatgataactttctcttgggagtggccaaaactctcttggattct tttccggctacagacaagtcttttagcagacttcttagcgaagttccatttctgcctgaa tctgccttgaaggttttggaggatctatgctatgctgatgttattgatcatgacggaaaa attatccgcgacattgagcgtgtaactcaaggccttggttctatctggagcttaattttg gggcgcccacaaaatcgccaaggctgcttaggaatagcattgaagtgtgctgtccaccca caggatgagattcgagctaaagctatacggctggtgacaaacaagctctttcagcttagt tacattgcagaagatgttgtgaaatttgcaacaaaaatgcttctctctgcggtagatcat gaagcttcagatgcagcgcaatcgggacctactgaacaaagaatggaggtcgaaagtctt gacataagtggtacttcacaggcttttgagtctgaaaatgacactactagagttgctaaa ccaacaattcaaagtgtttcatctatatcgttttctgaagcacaacgcctcatttcttta ttttttgctctatgtacaaagaaacccagtcttctacagattgtatttgatgtatatgga caagcctcaagaactgtaaagcaggcttttcatcgccacattccaaatcttgtgagagcg ctcgggcaatcgtattctgaattgctccatatcatatctgatccaccaaaaggaagtgaa aatcttctgacactggtgctacaaatattgactcaagacacaactccatcttctgatttg atatctactgttaaacatttatatgaaacaaaacttagagatgtcacaattctcgttcca ttattgtcatcgctctccaaaacagaggttttaccaattttcccacgacttgttgacctt ccattggaaaagtttcaaagggcacttgctcacatactacagggttcagctcatacaggt ccagctttaacacctgtagaggtgttggttgcaatccatggaattgttcccgagaaagat ggccttgcacttaaaaagattacagatgcttgctcggcttgttttgaacaacgtacagtg tttactcagcaggttctggccaaggcattgaaccagatggttgatcaaactccgttgcca ctgcttttcatgagaaccgttattcaggcagttgatgcttttcctgcactggttgatttt gttatggagatactctcaaaacttgtgactagacaggtgtggcgcatgccaaaactctgg gttggtttcttaaaatgtgtatatcagacgcagccacgttcttttcatgtattattgcag ttgccacctcaacaattggaaagtgcactcaacaggcatgctaatctcagagtgcccctt gcttcttatgccaaccaaccaactgtaaaatcttcacttagtagatcaactttagctgtt ctcggtcttgcaactgaaacgcatgtacagcaacatttaccaacaccaatgcaccattct gagacaagtacttcagttagtggggcaactctgacatga

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