Trifolium pratense (red clover): 123893923
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Entry
123893923 CDS
T08949
Name
(RefSeq) probable polygalacturonase At3g15720
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Module
tpra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123893923
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
123893923
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
End_N_terminal
Motif
Other DBs
NCBI-GeneID:
123893923
NCBI-ProteinID:
XP_045799711
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Position
LG1:complement(38902818..38908133)
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AA seq
414 aa
AA seq
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MDMSIYLTQFEVPDMDMLIVGILILSIASFNSCMVVNGKKHTLDVIQYGAKGDGKSDDTQ
AFMHAFKALCSGNHGNTLVVPKKYSFFVRPTLNFTGPCHSKHINIKVMGTILGPKRNDWG
KECSIMLIHFFNISRLTLEGSGVINGNGEGWWDRVKGAGDCSRIPTALQFDKCNGLKITG
LTHINGPGPHIAVTDSNDVTISNIHINTPKESHNTDGIDLTRTNRVNIHDSPISCGDDCI
AIKGGSNFTNISQITCGPGVHGISVGSLGGHGAEEYVENLIVKNCTFNGAASAVKIKTWP
GGKGHVKNIIFKDIIINQTNFPVYIDQHYMRTPEQDQAIKISKVTFSNIYGTCIGDDAIV
LDCAKIGCDNINLNQINITSINPKKPASVKCNYAHGKATNIISPRGNCVTKKQN
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggatatgagcatttacttgacacaatttgaagtacccgatatggacatgcttatagtt
ggcattttgatcctttctattgcttcattcaactcatgcatggttgtaaatggcaagaag
catacccttgacgtgattcaatatggtgccaaaggcgatggcaaatccgatgatacacaa
gcttttatgcatgcattcaaagctttatgtagtggtaatcatgggaatacactagtggtg
ccaaaaaagtattcattttttgtgcgtccaactctaaatttcactggaccttgtcattct
aagcatattaatatcaaggttatgggaaccatattaggacctaagagaaatgattgggga
aaagaatgttcaataatgttgattcatttcttcaacatatctcgattgactcttgaagga
tcaggagtcatcaatggtaatggtgaaggctggtgggacagggtgaaaggagctggagat
tgctctagaataccaacggctttacaattcgataaatgtaatgggcttaaaataactggg
ctcactcatatcaatgggccaggcccacatattgctgtgaccgatagcaatgatgtaact
atctcaaatatccacattaatacaccaaaagaaagtcacaacacagatggaattgattta
acaagaacaaatagagttaatattcatgacagtccaatatcatgtggtgatgactgtatt
gctatcaaaggtggatcaaactttacaaacatcagccaaattacatgtgggcctggtgtc
cacggaattagtgtagggagtcttggagggcatggtgctgaagaatatgtagaaaacttg
attgtcaagaattgcacattcaatggagctgccagtgctgttaaaatcaagacatggccg
ggtggaaaaggacacgtcaaaaatatcatcttcaaggacatcataataaatcaaacaaat
ttccctgtttatattgaccaacattatatgaggaccccagaacaggatcaagcaataaaa
ataagtaaagtaacatttagtaacatctatggaacatgtattggtgatgatgctattgta
ttggattgtgccaagatagggtgtgacaatattaaccttaatcaaatcaatattacttca
attaatccaaagaagccagcttctgtaaaatgcaattatgctcatggaaaagccactaat
atcatttcacctcgtggtaattgtgtcactaaaaaacaaaattaa
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