Trifolium pratense (red clover): 123893930
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Entry
123893930 CDS
T08949
Name
(RefSeq) GATA zinc finger domain-containing protein 14 isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123893930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123893930
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123893930
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123893930
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
123893930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
123893930
NCBI-ProteinID:
XP_045799724
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All DBs
Position
LG7:complement(39224155..39229289)
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AA seq
583 aa
AA seq
DB search
MSNHNTPPNFSNPPPNFSNPPNNHHPQMGVAGNYQNQNFMQPFIPNMQPPPPQPQPFMNA
PNQLHMPQMGGLAPQNNANYNNNNPMFPMHNAAPQMNFTPIQGQILAQNLLNLLQQPNMN
MNMNMNVPNGQFCPPVSYPMQNMNQQLPMQMQRQNPSQGVPYGMNNGPNPNPNPNPNPMF
GFPNQGNHAMVPQNPMFSGNPQFGVVPGNQVRPQINPNEKNRVPANGNTNGFVSGGPFPP
QQLQGNSSVPQNSNNTQSSAFRNSHSQENPNSNINTNFANSNWKGSPNKNFKNKQNRGGS
QGGFQKSKFRDNNKGNRKTGFPNEHIKGKGPSNERAGNFGLNSEELQQEPKKSFTPNYSE
QEIQQWREARKKNHPSSRGKIEKHSEPSTSQGYKVIDREVLQRQLKEVLAKQAELGVEVA
EIPSHYLKNGANQGPQSEEQNNTFTDRRKLRNNGKRNPARRSRNNKKQKLADKDFLENKK
SSLLQKLMSADIKRDKSYLLQVFRFMAANSFFKDYPGKPLVYPSVLVKEVESEVYRGKKH
LQDGKDVLEHDFKIVQNFVKDSENGNDNEDEEIYDEEEGEILE
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgtctaatcataatacaccccccaatttctcaaatcccccacccaatttctcaaatcct
ccaaacaatcatcatcctcaaatgggtgttgctggaaattatcaaaatcaaaactttatg
caaccctttataccaaacatgcaaccaccaccaccacaaccacaacctttcatgaatgct
ccaaatcagttacacatgcctcaaatgggtggtttagctcctcaaaataatgcaaattat
aataataataatccaatgtttcctatgcataatgcagcaccacagatgaattttactcca
attcaagggcaaattttagcacaaaatcttttgaatttgcttcaacaacctaatatgaat
atgaacatgaatatgaatgtgccaaatggtcaattttgtccacctgtatcatatccaatg
cagaatatgaatcaacagttacctatgcaaatgcaaaggcaaaacccttctcaaggtgtt
ccttatggtatgaataatggtcctaaccctaaccctaaccctaacccgaaccctatgttt
gggtttcctaatcaagggaatcatgctatggttcctcaaaatccaatgttttctggaaac
cctcagtttggtgttgtgcctggaaatcaagttaggccacagattaatccgaatgagaag
aatcgggttccggcaaatgggaacacgaatggttttgtatcaggtggaccttttccacct
cagcagttgcaagggaacagttctgtgccacaaaattcaaataatactcaaagttctgcg
tttaggaattcacattcacaggaaaatcctaatagcaacatcaatactaattttgcaaac
tctaactggaaaggatcgccaaacaaaaacttcaaaaataaacaaaatagaggtggatct
caaggagggttccagaagtctaaattccgtgataacaacaaaggaaataggaaaacgggg
tttccaaacgaacatattaaaggcaaaggtcccagtaatgagagagcaggaaattttggt
ttaaattctgaggaacttcagcaggaaccaaaaaaatcctttactccgaattattctgag
caagaaattcaacaatggcgtgaggcacggaagaagaatcacccttcctccagaggaaaa
attgaaaagcattctgaaccatcaacatcgcaaggctacaaggtcattgatagagaggtc
ttacaacgacagctcaaggaggttttagcaaagcaagctgagttgggagttgaagttgct
gaaataccttcacactacctgaagaatggtgcaaatcaaggccctcagagtgaagagcag
aataacacatttacggacagaaggaaattaagaaacaatggaaagagaaatccagccaga
agaagtcggaataacaagaagcagaagcttgctgacaaagatttcttagaaaacaagaaa
tcaagtttattacagaaactcatgagtgcagatataaagagagataaaagctacctatta
caggttttcaggttcatggcggcgaattcgttcttcaaagattatcctggtaagccactg
gtatatccatcagttttggttaaagaagtggaatctgaagtttatcgtgggaaaaagcat
ttgcaagatggaaaagatgttcttgaacatgattttaaaatagttcaaaattttgtaaag
gatagtgaaaatgggaatgataatgaagacgaagaaatttacgatgaagaggaaggagaa
attttagagtaa
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