Trifolium pratense (red clover): 123894147
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Entry
123894147 CDS
T08949
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123894147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123894147
03009 Ribosome biogenesis [BR:
tpra03009
]
123894147
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123894147
Spliceosome [BR:
tpra03041
]
Complex A
U1 snRNP components
U1 related factors
123894147
Complex B
123894147
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
Pre-60S particles
Helicases
123894147
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Motif
Other DBs
NCBI-GeneID:
123894147
NCBI-ProteinID:
XP_045800007
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All DBs
Position
LG7:56426568..56432517
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AA seq
497 aa
AA seq
DB search
MSRYDSRSSDPTSYRDRRSDSGLGGGASAPVSTTAATSGGSPRKVNLDGLPHFEKNFYNE
SPSVRAMTEDEVNDYRLRREITVEGKDVPKPIKSFSDASFPDYVLEEVKKAGFVEPTPIQ
SQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILDPGDGPIVLVLAPTRELAV
QIQQEATKFGASSRIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESNHTNLRR
VTYLVLDEADRMLDMGFDPQIRKIVSQIRPDRQTLYWSATWPKEVEQLARQFLYNPYKVI
IGSEDLKANHAIKQYVDIVPEKQKYDKLVKLLEDIMDGSRILIFMDTKKGCDQITRQLRM
DGWPALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLE
DYVHRIGRTGRAGAKGTAYTFFTAANARFAKELISILEEAGQRVSPDLAAMGRGAPPPPS
GGFRDRGKSFGSGRPWS
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctacgatagccgttcctccgaccccacttcttaccgcgaccggagaagtgat
tccggtctaggtggaggagcatctgcacctgtttctactaccgccgcaacttccggtggt
tctccgaggaaagttaatttggatggattacctcattttgagaaaaatttctacaatgaa
tccccttctgttcgggcaatgactgaggatgaagttaatgactatcgtcttcgtcgtgaa
atcactgttgaaggcaaagatgtacctaaacctattaaatcattctccgatgcttctttt
ccagactatgtgttggaagaagttaaaaaagctggatttgttgaacctacacccattcag
tcccaaggttggccaatggctttgaaaggacgtgatctgataggaattgcagagacagga
tcagggaagactctggcttatttgttacctgccatagtgcatgttaatgcccagcccatt
ctagatcctggggatgggcctattgtcttagttttggccccgacacgtgaacttgccgtc
caaatacaacaagaggctactaaatttggtgcatcgtcaaggattaagagcacatgcata
tatggcggggttcctaagggccctcaagtgcgtgatctccagaaaggtgttgaaattgtc
attgccactccgggaaggttaattgatatgattgagtcaaatcatactaacttgcgaagg
gtcacatacctggtattggatgaagctgatagaatgttggacatgggttttgatcctcag
attcggaaaattgtctctcagattcgtccagaccgtcaaactttgtactggagtgctact
tggccaaaggaggtcgaacaattggcaaggcagttcctttataatccatacaaagtaatt
ataggttctgaagatttaaaggctaaccatgctataaagcaatatgttgacattgttcct
gaaaagcaaaaatatgataaattggtgaagttgttggaagacatcatggatggaagccga
atattgatattcatggatactaaaaaaggatgtgatcagattactagacagctccgcatg
gatggttggcctgccctctcaattcatggagacaaaagtcaagcagagagagattgggtg
ctttcagagtttaaatctggaaagagtcctataatgaccgcaacggatgttgcagctcgt
ggtttagatgtgaaagatgtgaagtacgtgataaattatgacttcccgggatcactagag
gattatgttcaccgcattggaagaactgggagagctggtgcaaaaggaactgcatacaca
ttcttcacagcagctaatgccagatttgcaaaggaacttattagcatactcgaggaagct
ggacagagggtgagtcctgatttggcagcaatggggcgtggtgcacctcctccgccttca
ggaggcttccgagaccgggggaagagttttggcagtggtcgcccatggagctga
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