Trifolium pratense (red clover): 123894333
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Entry
123894333 CDS
T08949
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03015
mRNA surveillance pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123894333
09122 Translation
03013 Nucleocytoplasmic transport
123894333
03015 mRNA surveillance pathway
123894333
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123894333
03041 Spliceosome [BR:
tpra03041
]
123894333
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123894333
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123894333
Spliceosome [BR:
tpra03041
]
Complex C
Other components
EJC/TREX
123894333
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
123894333
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
123894333
NCBI-ProteinID:
XP_045800256
LinkDB
All DBs
Position
LG7:complement(5579647..5585451)
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AA seq
427 aa
AA seq
DB search
MAETKDEAYEEELLDYEEEEDKAPDTNGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVL
CHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPQIVVGTPGRILAL
AREKNLSLKNVRHFVLDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSR
AAELDRLLIECNFPSICIHSGMSQEERLKRYRGFKDGHSRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEIDIKQLPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcagaaacaaaggacgaagcttacgaggaagagcttctcgactacgaggaggaagaa
gacaaagctcccgacaccaacggagctaaagtcaacggtgaagctaccaagaagggctat
gttggaatacacagttcaggatttagagactttcttctcaaaccagagcttcttcgggct
atcgttgattccggattcgaacatccatctgaagtgcaacatgagtgcatacctcaagca
atccttggaatggatgtaatttgtcaagctaaatctggaatgggaaagactgctgtcttt
gttctctcaactttgcagcagattgatcctgttccaggccaagtttctgcactcgttctg
tgtcatacaagggaactagcttaccagatatgccacgagtttgagaggtttagtacctac
ttacccgatctgaaggttgctgtcttttatggtggcgtcaacatcaaagttcacaaggat
ctattgaaaaatgagtgccctcagattgttgttggaacgcctggaagaatacttgcattg
gctagggagaagaatctttctctgaagaatgttaggcatttcgttttagatgaatgcgat
aagatgctcgaatcactggacatgaggaaagacgttcaagacattttcaagctgactccc
catgataagcaagttatgatgttttcagcaacactcagcaaggaaatccgcccggtctgc
aaaaaatttatgcaagatcctatggaaatttatgttgatgatgaagccaagttaaccctt
catggacttgtgcagcactacatcaaactgaaagaggaggagaaaaaccgcaagttgaat
gatcttcttgatgcgctagacttcaaccaagttgttatctttgtgaaaagtgtcagtaga
gcagctgagctggacagactacttattgagtgcaattttccatcaatatgcattcactct
ggcatgtcccaagaagaaaggttaaagcgttacagaggtttcaaggatgggcattcaagg
attcttgttgcaacagatttggttggcagaggaattgacattgaacgtgtcaacattgtt
ataaactatgacatgcctgattctgcagacacctacttgcacagggttggtcgagctgga
agatttggtaccaaaggtcttgcaatcacatttgtttcttgttctagtgatgttgatgtc
ctcaacaatgtccagtcaaggtttgaaatagatataaagcagcttcctgagcagattgat
acctctacctacatgccatcgtag
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