Trifolium pratense (red clover): 123894581
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Entry
123894581 CDS
T08949
Name
(RefSeq) DNA-directed RNA polymerase I subunit 2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
123894581
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123894581
Enzymes [BR:
tpra01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
123894581
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
123894581
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF5689
Motif
Other DBs
NCBI-GeneID:
123894581
NCBI-ProteinID:
XP_045800570
LinkDB
All DBs
Position
LG7:18104218..18125174
Genome browser
AA seq
1176 aa
AA seq
DB search
MATKRPGSVEDLNLDALQELFKPHIESFDHMIDAGLETMFDHIKPVVVTHPSKPQKLTIM
LKNPKIHLPQKTDGIARTTHGWLYPFECRQAKISYTGRFTANVCFQYNDGGKIGPQIREN
INFGHFPIMLQSKLCNLKGKGPRELVSYKEEATEMGGYFILNGLERFIRPIIMPKRNYPM
STVRSSFSDRREGYTDKAVVIRCVRADQTSLTVKLYYLSNGSARLGFWVQGREYMLPVGI
LLKALIDTTDREIYANLTSYYNEKYEKGKGVVGTPRIGDRAQIILDELHDLSLFTRLQCL
QYIGEHFQPIMRELRNESHYIVADAVLNDYILVHLKNNFDKFNLLIFMLQKLFSLIDHTS
VPDNPDSLQNQEILLPGHLITIYLKEKLEEWLAKGKYMVLDEINKKGEKFDFTDSFQVRK
ILEKNHAPGISLTIENMLKTGRLATQTGLDLNQRAGFTIMAERLNFLRFLSHFRAVHRGA
AFAGARNTTVRKLLPESWGFLCPVHTPDGEPCGLLNHMTHTCRITSFYDSQGNLKVDYKI
KTSILNILIETGMTQSLPKILLPGPPEVLTVLLDGCIVGFIPSTEVEKVVAHLRELKVSS
SAVIPNDLEVGYVPLSMGGQYPGLYLFTSASRFVRPVRNISIPSNGNENIELIGPFEQVY
MEIQCPDGGNGGRKSPFPATHEEIHPTGMLSVVANLTPWSDHNQSPRNMYQCQMAKQTMA
FSSQTIKLRADQKLYHLQTPQSPIVRTSAYTKYNVDEFPTGTNAIVAVLAYTGYDMEDAM
ILNKSSVERGMFHGQIYQTETVDLAERGSRSEQASRTFRKSNQDKSCPAIDSDGLPHVGQ
RIRPGEPYCSTYNAITNKTYLFNKKGTEDAYIDSVAVDVKNGKHLKKANIRFRYPRNPII
GDKFSSRHGQKGVCSQLWPDIDMPFSGNTGMRPDLIINPHAFPSRMTIAMLLESVAAKGG
SLHGKYKDATPFRSSVKTDGEKSGSKSASLVDELGVMLKEKGFNYHGCEVLYSGVYGTEL
TCEIFIGPVYYQRLRHMVSDKYQVRSTGPIDPVTRQPVKGRKRGGGVRFGEMERDSLLAH
GAAYLLHDRLHTCSDYHIADVCSICGSLLTTTFIQPQKLPVRQIVGLPPRKPPSKVACHA
CQTGKGMETVAMPYIFRYLAAELASMNIKMTLKLSN
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atggcgactaaacgaccgggttcggttgaagatttgaacttagatgcactacaggagctt
ttcaagccacacatagaatctttcgatcatatgattgatgctggattggaaaccatgttc
gaccatatcaaacctgttgtagttactcatccttcaaagccacaaaaacttacaattatg
ttgaaaaatccgaagatacatctgccacagaagacggatggaattgcgaggacaacacac
ggttggttgtatccatttgagtgtagacaagcaaaaatctcatatacagggaggttcacg
gcaaatgtgtgttttcaatataatgacggtgggaaaattgggcctcaaataagagaaaat
attaattttgggcactttcccataatgctgcagtctaagctatgcaacttgaaaggcaag
ggtccccgggaacttgtgtcctacaaggaagaggcaacggaaatgggcggttacttcatc
ttgaatggccttgagagatttattcgacctataattatgccaaaacggaattatccgatg
agtacggtgcgaagttcatttagtgacagacgggaaggatatactgataaagcagttgta
ataaggtgtgtgagagctgatcaaacctcgttaacggtaaaattatattaccttagtaat
ggaagtgcaagacttggtttctgggtacaaggaagagagtacatgcttcccgtgggcatt
cttttgaaggccctcatcgacaccactgaccgagaaatttatgcaaatttgacaagctat
tataatgaaaagtatgaaaagggaaagggtgttgtcggaaccccgcgtattggtgatagg
gcacaaataatcttagacgaacttcacgatttgtctcttttcactcgtcttcaatgtcta
caatatatcggagagcattttcaacctattatgcgtgaactcagaaatgaaagccattat
attgtcgctgatgctgttctgaacgactacatacttgttcatctcaaaaacaattttgac
aagttcaatctgctcatattcatgttgcagaaacttttttcacttatagatcatacatcg
gtgccggataaccctgatagcttgcaaaatcaagagattttactccctgggcatctgatc
acaatttatcttaaggaaaaactagaagagtggctggcgaaaggaaaatatatggttctg
gacgagattaataaaaaaggagagaagtttgatttcactgacagttttcaagttaggaaa
attttggaaaaaaatcatgcaccgggaatcagtttaacaattgaaaacatgttgaaaact
ggaagattggctacacagacaggtctggatctgaatcagagggcaggatttacaatcatg
gctgaacggttaaactttttacgattcctgtcgcattttcgtgctgtccatcgaggtgct
gcatttgccggagctcgtaatacaactgtgcggaaactattgcctgaatcttggggtttt
ttatgccctgtacacacacctgatggggagccctgtggattattaaatcatatgacccac
acttgtagaattacgtcattctatgattctcaaggaaatcttaaagttgattacaaaatt
aaaacgtctatcctcaacattttaattgagaccggaatgacacaatcattgccaaagata
cttttacctggcccgccagaagttcttactgttcttctagatggttgtattgttggtttt
atcccttccactgaggttgagaaagttgttgctcaccttcgagaactgaaagtgtcatct
tctgcagtgattccaaatgatttggaagtgggatatgttcctttgagtatgggtggacaa
tatcctggcctctacctcttcacatctgcttcaagatttgttcgcccagtgaggaatata
tcaattccttccaatggaaatgaaaatattgaactcattggtccatttgaacaggtttat
atggagatacaatgtcctgatggtggaaatggtggaagaaaaagtccatttcctgcaact
catgaggaaatccatccaacaggaatgctaagtgtagttgctaatcttacaccatggtca
gatcataatcagagcccacgaaatatgtaccagtgtcagatggcaaagcaaacaatggca
ttttcttcacaaacgattaaacttcgtgcagatcagaagttatatcatcttcagactcct
cagtctcccattgttcgcacaagtgcatatactaaatacaatgttgatgaatttccaaca
ggcacaaatgctatagttgcagttctggcatatacaggatatgatatggaggatgccatg
attcttaataagtcatctgtggaacgtggaatgtttcacggacaaatatatcagacagaa
actgttgacttggcagagcgaggtagtcggtcagaacaagcttcaagaacattccgaaaa
agtaaccaagataaatcttgtcctgcaattgattcagatgggcttccacatgttggtcag
agaatacggccaggcgaaccctattgtagcacttacaacgcaataacgaataaaacatat
ctattcaataaaaagggtactgaagatgcttatattgactctgttgctgttgacgtcaaa
aatgggaagcatctaaagaaggctaatatacgctttcgataccctcgaaaccctataatt
ggtgataaatttagcagtagacatgggcagaaaggtgtttgctctcagttgtggccagat
attgacatgccattttctggaaatacggggatgcgcccagatcttattataaatcctcat
gcatttccttctaggatgacgattgctatgcttttggaatctgttgctgctaagggaggt
agtttacatggaaaatataaagatgcaactccatttcgtagttcagtgaagacagatggt
gagaagtctggatccaagtcggcttcacttgttgatgagcttggtgttatgttaaaagag
aagggatttaattaccatggatgtgaggttctgtacagcggggtttatggaacagaactg
acatgtgagatatttattgggcctgtttattatcagcggcttcgtcacatggtttcagac
aaataccaagttagatctactggccctattgatccagtcacccggcagccagtaaaagga
cgaaagcgtggtggaggagtacgatttggagaaatggaacgcgactctctactagcacac
ggggccgcgtatcttttgcatgataggctgcacacctgttctgattatcacattgctgat
gtgtgttccatttgtggaagcctgcttacgacaacattcatccagcctcaaaagctgccg
gttcgacagattgttggactaccaccacgaaaacctccaagtaaagttgcttgtcatgct
tgccaaaccggtaaaggcatggagacagttgccatgccttatatatttagatatttggca
gcagagttagcatcaatgaacattaaaatgactctgaagctaagtaattga
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