Trifolium pratense (red clover): 123895998
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Entry
123895998 CDS
T08949
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123895998
03015 mRNA surveillance pathway
123895998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123895998
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123895998
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
Motif
Other DBs
NCBI-GeneID:
123895998
NCBI-ProteinID:
XP_045802414
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All DBs
Position
LG7:complement(39898109..39905306)
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AA seq
414 aa
AA seq
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MAKPGRARRSPPSGSASGSSSLSSSSGSSRSRSRSRSRSFSSSSSPSRSSKSRSRSPPPQ
RRKSPGESARRGRSPPLPPPPQFKRTSSPTRKPSPVRESLVLHVEKLSRNVNEGHLKEIF
SNFGEVASVELVMDRVVNLPKGYGYVHFKTRGDAEKALLYMDGAQIDGNVIKAKFTLPPR
QRVSPPPKASAVVPKREAPRTDIAGADVEKDGPKRPIESSPRRKPLSPRRRSPVPRRAGS
PRRPESPRRRAGSPVRRRLDSPYRRGAGDTPPRRRPVSPGKGRSPSPPPRRFRSPGRVSP
RRIRGSPGRRRSPPPPIRRRSPPRRARSPPRRSPVGRRRSRSPIRRSARSRSRSFSPRRG
RPPVRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLKGRASSNSSSSASPPPARKP
NT seq
1245 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaacctggccgagctcgccgctcaccaccgtcgggttccgcctccggatcttct
tctctctcctcctcttctggttcctctcgctctcgctctcggtcccgttccagatctttc
tcttcctcctcatctccctcccgcagttccaagagccgtagccgtagtcctcctcctcag
agacgcaaaagtcctggtgaatcagctaggcggggtcgatctcctcctcttcctccccct
ccccagtttaagagaacttcttctcccacaaggaaaccttctcctgtacgagagtctctt
gttctgcacgtagaaaaactcagcaggaatgtcaatgaaggccatctgaaagaaatcttt
agtaattttggtgaggtggcaagtgtggagttggtgatggatcgagttgttaatcttcca
aaaggatatgggtatgtgcatttcaagacaagaggcgatgctgaaaaagcattattgtac
atggatggagcgcagatagatggcaacgtcattaaggcaaaatttactctgcctccaagg
cagagagtttcaccacccccaaaggcttctgctgttgttccaaagagagaggcgcctagg
actgatattgctggtgcagatgttgaaaaagatgggccaaagcgtccaatagaatcttct
ccccggaggaaacctctctcaccacggagaagatctcctgtgcctcgaagagctggatct
ccaagacgacctgaatctcctcgccgccgtgcaggttctcctgtccgtcgtcgattagac
tctccttatcgccgtggagctggagacacacctcctaggaggagacccgtgtctcctgga
aaaggtcgttctccatctccaccaccaaggcgctttagatcccctggaagggtctcacct
agaaggatacgtggaagcccaggtcggagacgttctcctcctccacctataagacgccgt
tcacctcctagacgagctcgtagtcctcctagaagatctccggttggtcgtaggcgtagt
cgctctccaattcgtaggtctgcacgctcacgctctagatcattctcacctcgcagaggt
cgaccacctgtgagacgtggaaggtcatcatcatactctgattcaccaagtcctcgcaag
gtgtctcggagatcaaagagtcgcagtccaagaaggcctttgaaaggaagagccagtagc
aacagtagcagcagcgcttcaccacccccagctcgcaaaccatag
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