Trifolium pratense (red clover): 123896773
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Entry
123896773 CDS
T08949
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123896773
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123896773
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123896773
mRNA degradation factors
5'-3' decay
Decapping complex
123896773
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Ortholog
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GFIT
Other DBs
NCBI-GeneID:
123896773
NCBI-ProteinID:
XP_045803094
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Position
LG7:15454017..15462517
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AA seq
877 aa
AA seq
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MDFSTVAGADSIAAPNTKDLNLLENVTKDGALFDASQYAFFGKDVAEEVELGGLDDEKDY
TPSFEFNEEEFFHNAEEADDVRSPFDVDDLTTTFMKLNKIVSGPKSAGVIGDRLSRENSS
ASEWSQRDDFSYWADHHTYDSEGSQDAKRWSSHPHSSITHLQESKPLYRTSSFPEQQRQL
QHQLQHRSSEPVPNWFDQQFYDIQTADDDKRWSSHPHSSISHIEGPKPLYRTSSHPDKRQ
ELPRFSSEPTLAPKSSFTSYPPPGGRSHQLAPNHSTGQLNLPFSGGAHMTLPSQNRSNLF
NSSLHLGGSKYEPHFSGNLAQFNTGSPLNNRIQNQWVNQTGLYPGDNSNLLNNMLQQQLY
HNNGSVSPHLLSQLQQQQHRLHHPVQQSAGLISGLQPHLFNHHLSSGSSIGRKYEHVLGD
VREHRQKSTRRHRFSQQASNASSQKIDSGSSLQFRSKYMTSDEIESILKMQLAAVTHCND
PYIDDYYHQARLAKQPSEVKFKLSFCPTKIKDVSSRARANTEPHGFLQVDALGRVSYVPI
RQPRPLLEVDPPNSSASGGSERIISEKSLEQEPLFAARITIEDGLCLLLDVDDIDRFLQC
NLLQDGGTQFLRRRNVLLEGLATSLHLVDPLGKNGHKAGLAAKDDLVFLRLASISKGRKL
LAKYLRLLAPGSELMRIGCMAIFRHLRFLFGSIPPDSAAAETTSDLAMVVCQCVQGMDLG
SLGACLAAVVCSSEQPPLRPLGSPAGDSASLVLVSVLKSATDLLTDPHAASNNKLGNRTF
WQASFDEFFGLLTKYCMNKYQNIMQSREQNVAALGSDADNAGSKEMPVDLLRASLPHTND
RQRKLLLDFAQRSAPVVGFNSYAGSSSSHVNSETVLS
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atggatttctctactgttgctggggctgattctattgctgctcccaacaccaaagatctt
aatcttttggaaaatgtcaccaaagatggtgcattatttgatgcatcacaatatgcattc
tttggtaaagatgttgctgaggaagttgagttgggggggttagatgatgagaaagattat
accccttcttttgagttcaacgaggaggagttttttcacaatgcagaagaggcggatgat
gtaagatctccttttgatgttgatgatctcactaccacttttatgaagctgaacaaaatt
gttagtggaccaaaaagtgcaggagttattggtgatcggctgtcaagagaaaattcctct
gcttctgaatggtcacagagggatgatttttcctactgggctgaccatcacacttatgac
agtgagggttctcaggatgctaaaagatggtcatcacatccacattcttctatcactcat
ctacaagagtcaaagcccttatacagaacatcgtcatttcctgagcagcaacggcagctg
caacaccaactccagcatcgctctagtgaacctgttcctaactggtttgatcagcagttt
tatgatattcaaactgctgatgatgataagagatggtcatcgcatccacattcctccatt
tcacacatagaaggaccgaagcccttgtatagaacatcatctcatcctgacaagcgacaa
gagcttcctcgtttttcgagtgagccaactttggcaccaaaatcttcatttacttcttat
cctccccctggtggtaggtctcatcaattggctccaaatcacagtacaggccagttgaac
cttcctttttctgggggagctcacatgacattgccatcacaaaatcgctctaatttattc
aattcttcattacacctgggtggatcaaaatatgagccacattttagtggcaatttggct
caatttaatactggttctccgctcaataatcgaatccagaatcaatgggtcaaccaaaca
ggtttgtatcccggagataattcaaacctcctgaataatatgttgcagcaacaactatac
cataataatggatccgtgtctccccatttactgagtcagttgcagcaacagcagcacaga
ttgcatcatcctgttcagcagtcagcaggcctaatatcaggtttacagcctcatttattt
aatcaccatctttcgtctggatcatcaataggtagaaaatatgaacatgtgcttggtgat
gttagagagcatagacaaaaatcaactcgcagacatcggttctctcaacaggcttctaat
gctagtagccagaagatcgatagtggttcatcattacagttcaggtccaagtatatgact
agtgatgaaattgagagtattcttaaaatgcagcttgctgctgtgactcactgcaatgac
ccctacattgatgactattatcaccaagctcgtcttgcaaaacaaccttctgaggttaaa
tttaaactttcattttgcccaaccaaaataaaggatgtttcttcacgagcccgggccaat
actgagccacatggttttcttcaggttgacgcattagggagggtttcatatgtgcccatt
cgtcagcctcgccctcttcttgaagttgatcctccaaactcctctgctagtggtggctct
gagcgaattatttcagagaagtcccttgagcaagagcctttgtttgcagccagaatcaca
attgaggatggtctctgtcttcttcttgatgtagacgatattgatcgtttccttcagtgc
aatctgctacaagatggtggaactcaattcttacgaagaaggaatgtccttttggaagga
ttagcaacatcacttcatctcgtggacccactgggaaagaatggacacaaagctgggctt
gctgctaaggatgaccttgttttcttacgattagcatctatttcgaagggacggaagctc
ctagcgaagtatcttcggttgcttgctcctggtagtgagcttatgcggattggctgcatg
gctatatttcgtcatttaagattcttatttggcagtatcccccctgattcagcagcagca
gagactacaagtgatcttgctatggttgtttgtcagtgtgtccaaggaatggatcttggt
tctctgggtgcttgtcttgcagcagtggtttgttcatcggagcagcctcctctgcgtccc
cttggaagtcctgctggagatagtgcttcccttgttttagtatctgttcttaaaagcgct
actgatcttctaactgatcctcatgctgcttctaacaataaattgggtaatcgaacattt
tggcaggcctcatttgatgaattttttggcctcctcacaaagtattgcatgaataagtac
cagaatatcatgcaatcacgggaacaaaatgtggctgcacttggatctgatgctgataac
gcaggtagtaaggaaatgcctgtcgacctcttacgtgcaagtcttcctcacaccaatgac
cgccagagaaagttattactagattttgctcagcgctctgcacctgtggttggatttaac
agctatgctgggagcagtagtagtcatgtgaactcggagacggtgcttagttga
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