Trifolium pratense (red clover): 123896816
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Entry
123896816 CDS
T08949
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123896816
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123896816
03036 Chromosome and associated proteins [BR:
tpra03036
]
123896816
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
123896816
Coactivators
SAGA/TFTC/STAGA complex
123896816
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
123896816
STAGA complex
123896816
TFTC complex
123896816
SAGA complex
123896816
SLIK complex
123896816
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
NBCH_WD40
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WDR90_beta-prop_4th
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_SPT8
Beta-prop_HPS5
Beta-prop_Vps41
Ge1_WD40
Beta-prop_Nup120_160
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_VPS8
Beta-prop_NWD2_C
LisH
PALB2_WD40
Beta-prop_DCAF12
Cytochrom_D1
WD_LRWD1
PROPPIN
Motif
Other DBs
NCBI-GeneID:
123896816
NCBI-ProteinID:
XP_045803156
LinkDB
All DBs
Position
LG7:complement(6186491..6196263)
Genome browser
AA seq
669 aa
AA seq
DB search
MDEHQILGFVAAYLKKKGFKQTEKVFQEEFQQNKSNSSSNSNLEPDIANHLLAFSQLENG
PARYHNGYSRLRTWTYSSLDLYRHELLRVLYPVFIHCFMDLVAKGHIQEARNFFTTFRED
HEMMHLRDIQKLEGVLSPTHLKEMEFAHSLRQSKFNIKICEYSYELLLQHLHSTQSTTIL
GIINEHINFQVTSGQPSLISDDPEAVTLTGSSQEAANQTNQKEIHWGLLEDSLEERLEKP
GALLSDSEKGDGEAKEGENDESKKRSIEVGKQGASVKKMKKDKGGSATGKIGKAEAIVVP
AAPRVKSDLPLPVIPTEVEQSILEDLRNRVQLSSVALPSVSFYTFINTHNGLSCSSISHD
GSLVAGGFSDSSLKVWDMAKLGQQPSSSLLQDENDTSQNEQMLGKSGGKRQYTLFQGHSG
PVYATSFCPVGDFILSSSADSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPMGHYFASSS
HDRTARIWSMDRIQPLRIMAGHLSDVDCVQWHANCNYIATGSSDKTVRLWDVQSGECVRV
FVGHRGMVLSLSMSPDGRYMASGDEDGTIMMWDLSSGRCVTPLVGHTSCVWSLAFSSEGS
ILASGSADCTVKLWDVNTSTKVSRTDEKNGNTNRLRSLKTLPTKSTPVNTLRFSRRNLLF
AAGALVKNA
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggacgaacatcaaattctcggattcgtagccgcatacttgaagaagaaagggttcaaa
caaacggaaaaagttttccaagaagaatttcaacaaaacaaaagcaattcatcctctaat
tccaatcttgaacctgacattgcaaatcaccttcttgcattttctcagttggagaatggt
cctgcaaggtatcataatggatatagtagattaagaacatggacttattcttcattggat
ttatacaggcatgagttgcttcgtgtgctttatcctgtgtttatccattgctttatggac
cttgttgcaaaagggcatattcaagaagctaggaattttttcactactttccgtgaagac
catgaaatgatgcacttgcgtgacattcaaaagttagaaggagttctttctccaactcat
ttgaaggaaatggaatttgctcattcactaaggcagagcaaattcaacataaagatatgt
gagtattcctatgagcttctgctgcaacatctacacagtactcaatccactactatactt
ggtataatcaatgagcatattaacttccaagttacctctgggcaacctagcttgatttct
gatgatccagaggctgttacccttactggaagcagccaggaagcagcaaaccagacaaac
cagaaagaaatacattgggggttgcttgaagactcactagaagaacggttggaaaagccc
ggggccttgctttcagactctgaaaagggtgacggggaagcaaaagaaggggagaatgat
gagagtaagaaacgatcaattgaagtaggcaagcaaggtgcttcagtcaaaaagatgaaa
aaagacaagggtggaagtgcaacagggaaaattggaaaggctgaagctatcgttgtacca
gcagctcctcgtgttaaatcagacctccccctgcccgtaatcccaacagaagtggaacaa
tctatccttgaagatttaaggaaccgtgtacaacttagtagtgttgcgctaccatcagtt
agcttttatacttttatcaatacacataatggtttaagctgttcctcaatatcccatgat
ggatcattggttgctggaggattttctgactcatcactaaaggtgtgggatatggcaaag
cttggacaacagccctccagttctcttttgcaggatgagaatgatacatcacaaaatgaa
caaatgcttgggaaaagtggtgggaaaagacagtatacattgtttcaaggtcactcgggg
cctgtttatgcaacctcgttttgtcctgttggggattttatactttcctcatcagcagac
tcaacaattcgtttatggagcacaaagcttaatgccaatcttgtttgttacaagggccac
aattatcctgtctgggatgttcagtttagtcccatggggcattattttgccagctcttca
catgacagaactgctaggatttggtcgatggacaggatacagcccttaagaataatggcg
ggacacttgtctgacgtggattgtgttcaatggcatgccaactgcaactacattgcaact
ggttccagtgacaaaacagttcgactatgggatgtgcagagtggagagtgtgtccgggtt
tttgttggtcacaggggtatggtcttgtctttatcaatgtctcctgatggtcgctatatg
gcatctggtgatgaagatggcacaatcatgatgtgggacctctctagtggccgctgtgtc
acacctttggttggtcacacctcatgtgtctggtcactcgctttcagctctgaaggttct
attctagcatctggatctgctgattgcactgtaaaactatgggatgtaaatacgagcact
aaggtttcaaggactgatgaaaaaaacggcaatactaacagactccgatcactgaagacc
ctgccaaccaaatctactcctgttaacactttacggttttctcgaaggaatcttcttttt
gcagctggagctcttgtaaaaaatgcttaa
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