Trifolium pratense (red clover): 123897115
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Entry
123897115 CDS
T08949
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123897115
Enzymes [BR:
tpra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
123897115
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Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Motif
Other DBs
NCBI-GeneID:
123897115
NCBI-ProteinID:
XP_045803562
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Position
LG7:complement(13574182..13576769)
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AA seq
455 aa
AA seq
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MARSLNIFLFFLCLAVITPTLTANELESEEFWKEERPEFDPYWEERSVEAKEFNHKAYFP
DPFAVSGNLTASITEVIAGKNLRRNLRGNKGGGQCLATNPIDRCWRCDPNWADNRQKLAD
CVQGFGRNTRGGKGGPIYVVTDPSDDELMDPKPGTLRYAVTRNGPLWITFAHSMLITLQQ
ELIMSSDKTIDGRGVDVFIANGAGITIQFVKNIIIHGIKVYDIQVREGGMIRDSETHYGF
RTKSDGDGISIFGSSNIWIDHVSMRNCTDGLIDAIMGSTAITISNGHFTDHNEVMLFGAN
DNHKDDKIMQITLAFNHFGKRLVQRMPRARFGFVHCVNNDYTHWEMYAIGGSSNPTIISE
GNRFIGPENKMVGKDLINSKEVTKREYTDESIWKNWQWRSINDEFLNGAYFIQSGPELKD
RPFSRQDMITAKPGSYVGRLTRYAGNLRCIVGKPC
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atggcgagatcactcaacattttcctattttttctttgtttggcagtcatcacgcctaca
ttgactgccaatgaattagagagtgaggaattttggaaggaagaaagacctgagtttgat
ccatattgggaggaaaggtctgtagaagcaaaagaattcaatcacaaagcttatttccct
gatccttttgcagtctctggcaacctaactgcttctattacagaagtcattgctggaaag
aacttaagaaggaacctgaggggaaacaaagggggaggacaatgtctggccacaaacccc
attgatagatgctggaggtgtgacccaaattgggctgataaccgccaaaaactagccgat
tgtgtccaaggattcggcagaaacacccgtggaggtaaaggcggtccaatctacgttgtc
accgatccttctgacgatgaattgatggaccccaaacccggcacactccgttacgcagtc
acacgtaatggacccctttggatcacattcgctcacagcatgctgatcacactacaacaa
gaacttatcatgagtagtgataagaccattgatggtagaggagtcgatgttttcattgcc
aatggtgctggtattaccattcaatttgttaagaatattatcatccatggaattaaggtt
tacgacattcaagtacgcgaaggtggtatgattagagattctgagacccattatggtttt
aggactaagagtgatggtgatggtatttccatatttggttctagtaatatttggattgat
catgtttccatgagaaattgtactgatggtttgattgatgcaatcatgggatctactgct
attaccatttccaacggtcacttcactgaccacaatgaggtgatgctttttggtgctaat
gacaatcataaagatgacaagatcatgcaaatcacattagcattcaaccactttggaaag
agattagtacaaaggatgccaagggcaagatttggttttgtccattgtgttaacaatgac
tacactcattgggaaatgtatgccattggtggtagctcgaaccctacaattatcagtgag
ggtaacagattcattggcccagaaaacaaaatggtaggtaaagaccttattaattctaaa
gaagtaacaaagagagaatacactgatgaaagtatatggaaaaattggcaatggagatca
ataaacgatgaatttttgaacggcgcttactttattcaatctggaccagagctaaaggac
agaccattttcaaggcaagacatgataacagctaaaccaggaagttatgttggaagactt
acacgatatgccggaaacctacgatgcattgtgggtaaaccttgttaa
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