Trifolium pratense (red clover): 123897116
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Entry
123897116 CDS
T08949
Name
(RefSeq) pectate lyase-like
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123897116
Enzymes [BR:
tpra01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
123897116
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Head_binding
Motif
Other DBs
NCBI-GeneID:
123897116
NCBI-ProteinID:
XP_045803563
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Position
LG7:complement(13592119..13594150)
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AA seq
435 aa
AA seq
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MNASELETEKFWKEERPEFDQYWEERSVEAKEFNQKAYFPDPFEVSGNLTASITEVIAGK
NLRRNLRGNKGGGQCLATNPIDRCWRCDPNWADNRQKLADCVQGFGRNTRGGKGGPIYVV
TDPSDDELMDPKPGTLRYAVTRNGPLWITFAHNMLITLQQELIMNSDKTIDGRGVDVYIA
NGAGITVQFVKNIIIHGIKIYNIQVREGGTIRDSETHYGLRTRSDGDGISIFGSSNIWID
HVSMKNCTDGLIDAIMGSTAITISNSHFTDHNEVMLFGANDNHKEDKIMQITLAFNHFGK
RLVQRMPRARFGFVHCVNNDYTHWEMYAIGGSSNPTIISEGNRFIGPENKMVGKDLINSK
EVTKREYTDESIWKSWQWRSINDEFLSDAYFIQSGPELKDRPFSRQDMITAKPGSYVGRL
TRFAGNLQCIVGKPC
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atgaatgccagtgaattagagactgagaaattttggaaggaagaaagacctgagtttgat
caatattgggaggaaaggtctgtagaagcaaaagaattcaatcaaaaagcttatttccct
gatcctttcgaagtctctggcaacctaactgcttctattaccgaagtcattgctggaaag
aacttaagaaggaacctgaggggaaacaaagggggaggacaatgtctggccacaaacccc
attgatagatgctggaggtgtgacccaaattgggctgataaccgccagaaactagccgat
tgtgtccaagggttcggcagaaacacccgtggaggtaaaggcggtccaatttacgttgtc
accgatccttctgacgatgaattgatggaccccaaacccggcacactccgttatgcagtc
acacgtaatggacccctttggatcacattcgctcacaacatgcttatcacactacaacaa
gaacttatcatgaatagtgacaagacaattgatggtagaggagttgatgtttacattgcc
aatggtgctggtattactgtacaatttgttaagaatattatcatccatggaattaagatt
tacaacattcaagtacgcgaaggtggtacgattagagattctgagacccattatggttta
aggactaggagtgatggtgatggtatttccatatttggttctagtaatatttggattgat
catgtctccatgaaaaattgtactgatggtttaattgatgcaatcatgggatctactgct
attaccatttctaacagtcacttcactgaccacaatgaggttatgctttttggtgctaat
gacaatcataaagaagacaagatcatgcaaatcacattagcattcaaccactttggaaaa
agattagtacaaaggatgccaagggcaagatttggttttgtccattgtgttaacaatgac
tacactcattgggaaatgtatgccattggtggtagctcgaaccctacaattatcagtgag
ggtaacagattcattggcccagaaaacaaaatggtaggtaaagaccttattaattctaaa
gaagtaacaaagagagaatacaccgatgaaagtatatggaaaagctggcaatggagatca
atcaatgacgaatttttgagcgatgcttactttattcaatctggaccagagctaaaggac
agaccattttcaaggcaagacatgataacagctaaaccaggaagttatgttggaagactt
acacgatttgccggaaacctacaatgcattgtgggtaaaccttgttag
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