Trifolium pratense (red clover): 123897239
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Entry
123897239 CDS
T08949
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
123897239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123897239
03009 Ribosome biogenesis [BR:
tpra03009
]
123897239
04131 Membrane trafficking [BR:
tpra04131
]
123897239
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpra04147
]
123897239
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
123897239
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
123897239
Membrane trafficking [BR:
tpra04131
]
SNARE
SNARE associated proteins
Others
123897239
Autophagy
Aggrephagy
Other aggrephagy associated proteins
123897239
Exosome [BR:
tpra04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
123897239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
CDC48_2
AAA_33
AAA_14
AAA_22
AAA_5
TIP49
AAA_17
NPHP3_N
RNA_helicase
nSTAND3
AAA_28
Mg_chelatase
Parvo_NS1
AAA_18
Viral_helicase1
ABC_tran
ATPase_2
IstB_IS21
AAA_7
NACHT
NB-ARC
TsaE
Vps4_C
Zeta_toxin
Sigma54_activat
AAA_24
DUF815
AAA_lid_PRS2_C
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
123897239
NCBI-ProteinID:
XP_045803750
LinkDB
All DBs
Position
LG7:52861027..52864677
Genome browser
AA seq
799 aa
AA seq
DB search
MSEPESVKKDFSTAILERKKSANRLVVDEALNDDNSVVVMHPQTMEKLGLFRGDTLLIKG
KKRKDTICIAVGEDTCEEARIRMNKVVRSNLRVRLGDVVSVHHCSDVKYGTRVHILPIDD
TIQGITGNLFDVFLKPYFLEAYRPVRKGDLFIVRGGMRSVEFKVIETDPGEYCVVAPDTE
IFCEGEPVKREDEDRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGIL
LYGPPGSGKTLIARAVANETGAFFICINGPEIMSKMAGESESNLRKAFQEAEKNAPSIIF
MDEIDSIAPKRDKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGR
FDREIDIGVPDEIGRLEVVRIHTKNMKLSDDVDLERISKDTHGYVGADLAALCTEAALQC
IREKMDLIDLEDETIDAEILNSMAVTNEHFHTALGTSNPSALRETVVEVPNVSWEDVGGL
ENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV
KGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGSNGDAGGAADRVLN
QLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRHSIFKSCLR
KSPVAKDVDLRALAKYTQGFSGADITEICQRACKYAIREDIDKNIEQARKRKENPEAMDE
DLVDNEVAEIKATHFEESMKYARRSVSDADIRKYQGFAQTLQQSRGFGNEFRFANTTGSD
PFVATTTAAGGADEDDLYN
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacctgaatcagtgaagaaggacttttccaccgcgattctggaacgcaagaag
tcagcaaacaggcttgttgtggatgaagcgcttaacgatgacaactctgttgttgtgatg
cacccacaaactatggaaaagttggggcttttcagaggtgacaccttactcatcaaggga
aagaaaaggaaggatactatttgtatagctgttggtgaggatacctgtgaggaggctagg
attaggatgaacaaagttgtgaggtcgaatttgagggttcgacttggagatgttgtttct
gtgcaccactgttctgatgtcaagtatgggacacgtgtccacattcttcctattgatgat
accattcagggtatcactggcaatctctttgacgttttcttgaaaccctatttcttggag
gcttatcgtcccgtcagaaagggagatctatttattgtgcggggagggatgagaagtgta
gagtttaaggtgattgaaactgatcctggggagtattgtgtggttgctccagacaccgag
atcttctgcgaaggggaacctgtgaaaagagaggatgaagacaggcttgacgaaattggt
tatgatgatgtgggtggtgttaggaagcaaatggcacagattcgtgaattggttgagctt
ccattaaggcatccacaacttttcaagtcgatcggtgtgaaaccacctaaaggaattttg
ctatatggacccccgggttctggaaagaccttaatagcaagagctgttgctaatgaaacc
ggagccttctttatttgtattaatggtccggagattatgtccaaaatggctggagagagt
gaaagcaatcttcggaaagcatttcaggaagccgaaaagaatgcaccgtccatcatcttt
atggatgaaattgattctattgcacccaagcgggacaagacaaacggtgaagtcgaaaga
aggatagtttcacaacttttaactctaatggatggattaaaatctcgtgctcatgttatt
gttatgggcgccactaatcgtccaaatagcattgacccagcattgagaaggtttggtaga
tttgacagagaaatcgatataggtgttccagatgagatcgggcgacttgaagtcgttcgc
atacataccaaaaacatgaagctctctgatgatgttgatttggagagaatttcgaaagat
actcatgggtatgttggtgccgaccttgctgccctttgcaccgaagctgctttgcaatgc
attagagagaagatggacctcattgacttagaggatgagaccattgatgctgagatactg
aattccatggcagttacaaatgagcatttccatactgcacttggaacaagcaacccatca
gctttacgtgaaactgttgttgaggtgcctaatgtcagctgggaggacgtcggaggcctt
gagaatgtcaagcgtgaactgcaagagactgttcaatatcctgttgagcacccggaaaag
tttgagaagtttgggatgtcaccatcaaaaggagttctcttctatggtcctccgggatgt
ggaaaaactttgttagccaaagcaattgccaatgaatgtcaagctaacttcatcagtgtg
aaaggaccagaattgcttacaatgtggtttggtgaaagtgaagccaatgttagggaaatt
tttgacaaggctagacaatcggctccatgtgtcctcttttttgatgagcttgactccatt
gccactcagagagggggcagcaatggggatgctggtggtgctgccgacagagttctaaat
caacttttgacagagatggatggcatgtctgccaaaaagaccgtattcattattggagcc
actaacagacctgacatcattgattcagcacttctccggccaggccgtctagatcagttg
atctatattcctcttcctgatgaggattcccgtcattcgatcttcaagtcctgcttgagg
aagtcaccggtcgcaaaagatgttgatttgagagcattggctaagtatactcaaggtttt
agtggtgccgacattacagaaatatgccagcgagcatgcaaatatgctataagagaagac
attgataagaacatagagcaagcgaggaagaggaaggaaaaccctgaagccatggatgaa
gacttggtcgacaatgaagttgcagagattaaggcgactcatttcgaggagtcaatgaag
tatgcgcgtaggagtgtcagtgacgctgatatacgcaaataccagggatttgctcagact
ttacaacaatcgaggggatttggcaacgaatttaggtttgcaaatacgactggatctgac
ccttttgtagcaacaactactgccgcgggtggggctgatgaagacgatctttataattaa
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