Trifolium pratense (red clover): 123897390
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Entry
123897390 CDS
T08949
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 8-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123897390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123897390
03036 Chromosome and associated proteins [BR:
tpra03036
]
123897390
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123897390
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
123897390
mRNA degradation factors
5'-3' decay
Decapping complex
123897390
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Gene silencing
piRNA pathway
123897390
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
Mdt30
TFIIA
CMS1
Motif
Other DBs
NCBI-GeneID:
123897390
NCBI-ProteinID:
XP_045803948
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All DBs
Position
LG7:complement(29944522..29955313)
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AA seq
524 aa
AA seq
DB search
MMNNNNRARYPPPGIGPGRGGSNPNVNLNQNPNQSPNLNHQFQQRAPYNHHNQQQQNQQQ
QNQFQQQQQQFYAQRQRQQQQQQQQQQQQQQWLRRAQLGGSESNAVADEVEKTVQSEAID
SSSQDWKARLKIPPADTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEES
IPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKE
LGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCSMLVMDE
ADKLLSPEFQPSIQQLINFLPTNRQILMFSATFPVTVKDFKDRFLHKPYVINLMDELTLK
GITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAK
MLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGR
FGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAFYCR
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atgatgaacaataacaatagagcgagatatccaccacctgggattggtcctggacgtggt
ggttcgaatcccaacgtgaatctgaaccaaaacccaaaccagagccctaatttgaaccat
cagtttcagcaaagagcaccttataatcaccataaccagcaacaacagaaccaacaacaa
cagaatcagttccagcagcagcagcaacaattctatgcgcagagacaaaggcagcagcaa
cagcagcagcaacaacaacaacaacaacaacagtggctgagaagggcgcagttgggtggt
tcagaatcgaacgctgttgccgatgaagtcgagaagaccgtgcaatcggaagccattgac
tcaagttctcaagactggaaggcaagactaaagattccgccagctgatacacgttatagg
acagaggatgtgacagcaactaaaggaaatgaatttgaagattactttttgaaacgtgag
ctgctcatgggaatatatgagaagggttttgaaagaccttcccctatccaagaagaaagc
attccaattgctctcaccggcagtgacattcttgccagggcaaaaaatggaactggcaaa
acagctgcattttgcattcctgcattggaaaaaattgatcaggataataatgttattcaa
gttgttatcttggtcccaacacgagaattggctttgcaaacatctcaagtgtgtaaagag
cttggaaagcatctgaaaatccaagttatggttacaacaggcggtaccagtctaaaagat
gacataatgcgtttatatcaaccggttcatctactggttggaaccccaggaaggatatta
gatcttgcgaagaagggtgtttgcgttcttaaggattgctccatgcttgtcatggatgag
gctgataagctgctctctccagagttccagccctcaattcaacagctgattaattttctc
cctacaaaccgtcaaatcctgatgttttcagcaacatttcctgttactgtgaaggacttc
aaagataggtttcttcataaaccatatgtcattaaccttatggatgagctcactctgaag
ggtattacacaattttatgcatttgtggaagagagacagaaagtccactgcttaaatact
ctattttctaagctgcaaataaaccagtcaattatcttttgcaattcagtgaatcgggtt
gaacttcttgccaagaaaatcactgaacttgggtattcatgcttctatattcacgcaaag
atgttgcaagaccaccgtaatagagtatttcatgatttccgcaatggtgcatgccgaaat
cttgtctgtactgatctttttactaggggaatagacatccaagcagttaatgttgttatt
aacttcgattttcccaagaactcagaaacttatttgcacagggttggtcgttcagggagg
tttggccaccttggtttagcagtgaacttgatcacttatgaggaccgctttaatttatat
aggattgaacaagaacttggcactgaaataaagcaaattccgccacacattgatcaagca
ttttattgtcggtga
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