Trifolium pratense (red clover): 123897417
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Entry
123897417 CDS
T08949
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB4-like
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03022
Basal transcription factors
tpra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123897417
09124 Replication and repair
03420 Nucleotide excision repair
123897417
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123897417
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123897417
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123897417
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123897417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Motif
Other DBs
NCBI-GeneID:
123897417
NCBI-ProteinID:
XP_045804003
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Position
LG7:9962299..9972663
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AA seq
294 aa
AA seq
DB search
MASAPSKHYTDDISLLVVTLDTNPFFWSTFSFHFSDFLSQVLAFLNSILLLGQLNQVVVI
ATGCNSCSYIYDSSSDRNHASTNGTMPALYSNLLHNLDEFAAKDQQLTTDHKPATVPSSL
LSGALSMALCYIQRAFRAGPMHPQPRILCLHGSTDGPEQYVAIMNAIFSAQHSSVPVDSC
YIGSNNSAFLQQASYITGGIYYRPPQLEGLFQYLSTVFATDLHSREYLRLPKSLGVDFRA
SCFCHKQTIDMGYVCSVCLSIFCEHHDKCSTCSSVFGQAQSDVASADSRKRKAS
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgctccttcaaaacattacacagatgacatcagcctcctcgtcgttacacta
gacaccaatcctttcttctggtccactttctccttccacttctctgactttctctctcaa
gttctcgcttttctcaattcaatactcctcctcggtcaactcaaccaagttgtagttatt
gccaccggatgcaattcatgttcctacatttacgattcctcttccgacaggaaccatgct
tccactaacggtacaatgcctgcgctttattccaatcttcttcataatcttgatgaattt
gccgctaaggatcagcaattgacaacggatcataaaccggcaaccgttccttcttcactg
ttatcgggagcattgtccatggccctctgttatatacagagagcttttcgtgcaggaccg
atgcatcctcaacctcggattctatgtctgcacggatctactgatggaccagaacagtac
gtggcaatcatgaatgcaatattctctgctcagcattcttcagttcctgtagattcttgt
tacattggttcaaacaattctgcattccttcagcaggcttcatacataactggtggcata
tattacaggcctccccaattggaagggctttttcaatatctttcaacagtgtttgcaact
gatttgcattctcgtgaatatttaaggcttcctaaatctttgggtgtggattttcgtgcc
tcgtgcttctgccataagcaaacaattgacatgggctatgtatgttctgtatgcttatcc
atattctgtgagcatcacgacaagtgctcaacctgtagctctgtatttggccaggctcaa
tctgatgttgcctcagcagacagtcggaaaagaaaggcttcttaa
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