KEGG   Trifolium pratense (red clover): 123897539
Entry
123897539         CDS       T08949                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    123897539
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tpra03021]
    123897539
Enzymes [BR:tpra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     123897539
Transcription machinery [BR:tpra03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     123897539
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 CFAP77
Other DBs
NCBI-GeneID: 123897539
NCBI-ProteinID: XP_045804185
LinkDB
Position
LG7:6251589..6258026
AA seq 1197 aa
MGHVGSSKDAHKLNINDVDLEYDTEMEDIDLDEDPSTNSEILNEVGPDMVKYFCKKASVM
FFDEYGLISHQINSYNQFISSGLQDAFNSFGDLAVTPGFDPSKKGDNEHYRYATVKFGNV
TLDRPKFWCGEGNAQELKMLPRHARLQRMTYASKMKVEVQVQVYIPKKVRSDKFKTGKEE
YIDREIIMDEKREITIGRLPVMVMSDLCWMSEAEKGDCEFDHGGYFLIKGAEKIFIAQEQ
IFLKRLWVSNIPYWAVAYKSQMKRNRMVVKLVENSTFEGIKNGEKMLTVYFLSVEIPVWI
LFFALGVTSDKEIVDLIDYEVGDGRVDNILFASIREADEKCETFRRGKNALLFLEERVKG
VQFPPPESIDECLDMYVFXSIKGLKRKARYLAYMVKVLLLAYTGRRKTDNRDDFRNKRLE
LAGELLEREIKVHFAHARKRMGKALQRDLYGDRDVRQIEHYLDASIITNGLQRAFSTGAW
THPFKRMERISGVVATLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLS
TPDGENCGLVKNLAVTGVVSTNVTEPILPQLFDCGMEELVDDTTTVLGRKDKVFLNGDWV
GICSDSTSFVTELRNRRRKNELPHQVEIKRDQNQREVRILSDAGRILRPLLVVSNLLKIK
GSKSDHKSFKSLLDNGVIELIGPEEEEDFKTAWSVQYLFGKEGKSSVKYTHCELDMSYLL
GLSCSLVPFANHDHARRVLYQSQKHSSQAIGYSTTNPNIRVDALSHQLFYPQRPLFQTMA
SDCLGKPGYLGTSKVLPKSEFYNGQNAIVAVNVHLGYNQEDSLVMNRASLQRGMFRSEHI
RSYKAEIENKESSDKRKKPEDIVNFGKIQSKIGRVDSLDEDGFPFVGANLQSGDIIIGRC
ADSGTDHSIKLKHTERGYVQKVVLSSNDEGKNFATVSLRQVRSPVLGDKFSSMHGQKGVL
GFLESQENFPFTKQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACVGSLRNATPFSTS
SVEAITNQLHRAGFSRWGNERVYNGRTGEVVRSLIFMGPTFYQRLHHMSEDKVKFRNTGP
VHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDSSQIHICSKCKNVA
NVILRPVSGGRKIRGPYCRFCESADDIVVASVPYGAKLLSQELFSMGINLKFETELC
NT seq 3594 nt   +upstreamnt  +downstreamnt
atgggtcacgttggttcaagcaaagacgcacacaagctcaatatcaacgatgttgatcta
gaatacgacacagaaatggaggacattgacctagacgaagatccatcaacgaattcagaa
atcctcaacgaagtaggtcctgatatggtgaagtatttctgcaaaaaagcttcggtgatg
tttttcgacgaatatggtttaatcagtcatcaaatcaactcgtataatcaatttatcagt
tctggtcttcaagatgctttcaattcgtttggagatctcgctgttactcctggttttgat
ccttctaagaaaggagataacgagcattatcgttatgcgactgtgaaatttggaaatgta
acccttgatcgacctaagttttggtgtggtgaaggtaatgctcaagagttgaagatgctt
ccgaggcatgctaggttgcagagaatgacttatgcttctaaaatgaaagttgaggttcaa
gttcaggtttatattccgaagaaggttcggagtgacaaatttaagactgggaaggaggag
tatattgatagggagattatcatggatgagaagagagaaataactattgggagacttcct
gttatggttatgtctgatttatgttggatgagtgaagctgaaaaaggtgattgtgaattt
gaccatggaggttactttctcatcaagggtgctgagaagatttttattgcacaggagcag
atatttctgaagaggctctgggtttcaaatattccgtattgggcagttgcatacaagtca
cagatgaagagaaataggatggttgttaaattggtggaaaattccacttttgaaggaatt
aaaaacggagagaagatgctgacagtatattttctgtctgtggagattcctgtatggata
ctgttttttgctcttggtgtcacttcagataaagagattgttgatctcattgattatgaa
gtgggagatggaagagttgacaacattctctttgcatccattcgggaggccgatgagaag
tgcgaaacatttcgcaggggaaagaatgcacttcttttcttagaggaacgtgtaaaaggt
gtccaatttccaccacccgaatctattgacgagtgccttgacatgtatgtctttncgagc
attaaagggttaaaaagaaaggcacggtacctggcatacatggtgaaagttctcttgctg
gcatatactggccgccgaaaaactgataacagggacgactttcgaaataagaggcttgag
ttggctggtgagctgctcgagcgtgagattaaagtacattttgcacatgctcggaagcgg
atggggaaggctctgcagagagatctttatggagatcgagatgttcgtcaaattgagcac
tatcttgatgcttccattattacaaatggtctccaaagagcgttttctactggagcatgg
acacatccttttaaaaggatggaaaggatttctggtgtggttgcaactcttggccgaaca
aatccactgcaaaccatggctgaattaagaagaacaaggcaacaggttcagtacacagga
aaagttggggatgctagatacccgcatccttcacactgggggaaggtttgtttcctgtct
acccctgatggtgaaaattgtggactggtaaaaaatttggctgtcacaggagtggtaagt
accaatgtgacagaaccgatacttcctcagctgttcgattgtggaatggaagaacttgtt
gatgatactaccactgttcttggaagaaaagacaaagtcttcctaaatggggactgggtt
ggaatttgttcagattccacatcatttgtaacagagctacgaaacagaagacggaaaaat
gaattgcctcatcaggtggaaatcaaaagagaccaaaatcaacgagaagtgcgtatatta
tctgatgcgggaaggattctccgtccactcttggtagttagtaatctgcttaagattaaa
ggatctaaatcggaccataaatctttcaagtccttactggacaatggcgtgattgagctg
attggtcctgaagaagaagaggatttcaagactgcttggagtgttcagtatttatttggc
aaagagggaaagtcttctgtgaagtacacgcattgtgagctggatatgtcatacttgttg
ggcctaagctgttcacttgttccatttgcaaaccatgaccatgcaaggagagtgttgtat
caatcccagaagcattcttcacaggctattggctattctacgactaaccccaatataaga
gttgatgctttgtctcaccaattattttatcctcaaagaccactttttcagacaatggca
tctgattgtcttggaaaacctggatatctaggtacaagtaaagttcttccgaagtctgaa
ttctataatgggcagaatgcaattgtggctgtcaatgtacatctcggatataatcaagaa
gattccttggtgatgaaccgtgcttctttgcagcgtggtatgttcagatctgagcacata
aggagttacaaagctgaaattgaaaataaggaatcttctgataagagaaagaaacctgaa
gacatagtaaactttggaaagatacagagtaaaattggtcgagttgatagccttgatgag
gatggctttccatttgttggtgcgaatttgcagagtggtgatattattattgggcggtgt
gctgattcagggacagaccacagtataaaattaaaacacaccgaaaggggttatgttcaa
aaggttgtgctgtcttctaatgatgaggggaagaattttgcgactgtttcgttaagacag
gttcgaagtcctgtacttggagataagttctccagtatgcatggacagaagggggtttta
ggatttcttgagtctcaggaaaattttcctttcacaaaacaaggtattgttcctgatatc
gtcataaatccacatgcatttccctcgcgacaaactcctgggcaactcctagaagctgct
ttaggaaaaggtattgcttgtgttggttcactgagaaatgctactcctttctccacttcc
tctgttgaagcaattactaaccagcttcacagagctggcttttcaagatgggggaatgaa
cgagtatataatgggaggactggtgaggtggtccgctcactcatatttatggggccaaca
ttctaccagcgattgcaccacatgtctgaggacaaggtcaaattcaggaacactggtcca
gttcacccactgactcgacagcctgttgctgacaggaagcgatttggaggtatcaagttt
ggtgagatggagcgtgattgcctgatagctcatggtgcatcggccaacctatacgaacga
ctcttcaccctgagtgattcatcacagatacacatttgcagtaaatgcaaaaatgtagca
aatgtgatcttgcgaccagtatctggtggccggaaaattcgaggtccctattgccgtttc
tgtgagtcagctgatgatattgtggtggccagtgttccatatggagctaaattgttgtct
caggagctgttcagcatgggcatcaacctcaagtttgaaactgagctttgctag

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