Trifolium pratense (red clover): 123897578
Help
Entry
123897578 CDS
T08949
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123897578
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123897578
Spliceosome [BR:
tpra03041
]
Complex C
Other components
Complex C specific factors
123897578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_30
AAA_19
nSTAND3
AAA_23
Cas3-like_C_2
ResIII
AAA_29
AAA_7
AAA_11
Motif
Other DBs
NCBI-GeneID:
123897578
NCBI-ProteinID:
XP_045804234
LinkDB
All DBs
Position
LG7:complement(37144543..37153039)
Genome browser
AA seq
700 aa
AA seq
DB search
MAQFWKPGTEKPDAQVVDDEEGGVLFIPGSNSLSSSSSGYGYASIEKQRQRLPVYKYRNA
ILYLVETHATTIIVGETGSGKTTQIPQYLIEAGWAAGGRLIACTQPRRLAVQAVSSRVAQ
EMGVKLGDQVGYTIRFEDVTNQDETVLKFVTDGVLLREMMNDPLLTKYSAIMVDEAHERS
ISTDILLGLLKKIQRRRPELRLIIASATIEAKSMADFFRPRKKRREPENEENGLKVEPAI
LSVEGRGFNVQINFAEEPVQDYVQAAVSTVLLIHERESTGDVLVFLTGQDDIDAAVHLFN
EEIQTNRKRSSGLVVLPLYSGLPRADQELVFTPTARGKRKVVISTNIAETSLTLEGIVYV
VDSGFSKQRFYNPISDIENLVVAPISRASAKQRAGRAGRVRPGKCYRLYTEEYFLNHMSN
EGIPEIQRSNLVSCVIQLKALGIDNILGFDWPASPSPEAMIRALEVLYSLGILDDDAKLT
SPTGFQVAEIPLDPMISKMIIASSQLGCSEEIITIAAALSVQSIWISARGIQKESDEAKL
RFAAAEGDHVTFLNVYKGFHQSRKSSQWCHKNFVNYHAMKKVVEVREQLKRVAQRIGLVL
KSCESDMQVVKKAVTAGFFANACRLEPYSHDGMYKTLRGSEEVYIHPSSVLFRVNPKWVI
FNSLVSTDRKYMRNVMTIDPSWLLEAAPHFYQLQQPNLLH
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaattctggaaaccagggacggagaaacctgatgctcaggttgtagacgacgaa
gaaggcggtgttctattcatacccggttctaactcactttcttcttcttcttctggttat
ggctacgctagtatcgagaaacaacgccaacgcttacctgtctacaagtaccgcaacgcc
attctctacttggtggaaactcacgccactaccatcatcgtcggtgaaaccggtagcggt
aaaaccacacaaatccctcagtacttgatagaggcgggttgggcagccggtggaagactc
attgcttgtactcaacctcgacgactcgctgttcaggctgtttcttctagagttgctcaa
gagatgggagttaaactcggtgatcaagttggatacactattaggtttgaagatgtcact
aatcaagacgaaacggttttaaaatttgtaaccgatggggtgctcctgagggagatgatg
aatgaccctcttttgacaaaatatagtgctataatggtggatgaagctcacgaaaggtcc
atttcaactgacatcttacttggactattgaaaaagatccaacgacgtcgaccagagttg
cgattaattattgcatctgctactattgaagcaaaatcaatggctgacttctttcgccca
agaaaaaaacgccgagaacctgaaaatgaggagaatggactaaaagttgaacctgcaatc
ttatcagtggagggaagaggcttcaatgtacaaattaattttgctgaggaacctgtccaa
gactatgttcaggctgctgtttcaacagtactcttgatccatgagcgggaatccactgga
gatgttctagtattccttactggtcaagatgatattgatgctgctgttcatttattcaat
gaagaaattcaaactaatagaaagcgctcttcaggattggttgttttgcctctctattca
ggactcccacgtgctgatcaagaattagtgttcactccaactgctagaggaaagaggaaa
gtagtaatttctaccaatatagcagaaacatcactcacgttggagggtattgtctatgtt
gttgacagtggattctcaaaacagcggttctacaatccgatctctgatattgaaaatctg
gttgtggctccaatttctagggcttctgctaaacaaagagctggtagggctggacgagtt
cgaccaggaaaatgttacaggctatatacagaagaatattttcttaaccacatgtctaac
gagggaattccagagatacagagatcaaatctagtctcctgtgtaatccagttaaaagct
ttggggattgataatatattgggctttgactggccagcatctccatcacctgaagcaatg
atccgagcactggaagttctctactcacttgggatcttggatgatgatgccaagcttact
tcaccaactggattccaagttgcagaaattccacttgaccctatgatctccaaaatgata
atagcttccagccaacttggatgttcagaggagataatcacaattgctgcggctctttcc
gttcaatctatctggatatcagcgagagggatacaaaaggaatcagatgaagcaaaattg
agatttgccgctgccgagggtgaccatgtaacatttcttaatgtatacaagggttttcat
cagtctcgtaaatcgtcacagtggtgtcacaagaactttgttaactaccatgccatgaaa
aaggttgttgaagttagagaacaactcaaaagagttgcacagaggataggcttagtctta
aaatcttgcgaaagtgatatgcaggttgttaaaaaagcagttactgctggcttttttgct
aatgcatgtcgtcttgagccatacagtcatgatgggatgtacaagacgttaagagggtca
gaagaagtatatattcacccatcatcagtgctattcagagtaaatccaaagtgggttatt
ttcaattctctagtatcaactgatcggaaatatatgcgtaatgtgatgacaatagatcct
tcatggctattggaggctgctcctcacttctaccagctacaacaacctaatcttcttcat
tga
DBGET
integrated database retrieval system
