Trifolium pratense (red clover): 123897831
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Entry
123897831 CDS
T08949
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
123897831
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tpra04131
]
123897831
Membrane trafficking [BR:
tpra04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
123897831
Hops complex
123897831
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_C
Clathrin
TPR_Vps41
zf-C3H2C3
Beta-prop_EML
TPR_GEMI5
zf_RING_Vps8_fungal
zf-C3HC4_2
TPR_ELP1
Cytomega_UL84
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
123897831
NCBI-ProteinID:
XP_045804575
LinkDB
All DBs
Position
LG1:40939382..40944858
Genome browser
AA seq
965 aa
AA seq
DB search
MYQWRKFEFFEEKYVSKCTIPEEEDEDEREKDRERKIECCSSGRGKVVTGFDDGTVCLFD
RGLKFNYAFQPHSSSVLFLQHLKQRNFLVTIGEDEQLTPQQSALCLKVFDLDKMQSESTS
TASPDCVGILRIFTNQFPEAVITSFIVLEEVPPILLIAIGLNNGSIYCIKGDIARERITR
FKLQVENHSDKTHSSITGLGFKVDGQTLQLFAVTPSSVSLFSLHDQPPRRQTLDQIGCGI
NSVAMSDRSEFIIGRPEAVYFYEVDGRGPCWAFEGEKKLVGWFRGYLLCVIADQRTGKHT
FNIYDLKNRLIAHSALVKEVSHMLYEWGTIILIMTDKSTLCIGEKDMESKLDMLFKKNLY
TVAINLVQTQQADAAATSEVLRKYGDHLYSKQDYDEAMAQYINTIGQLEPSYVIQKFLDA
QRIYNLTNYLEKLHEKGLASKDHTTLLLNCYTKLKDVEKLNLFIRSEDSIGELKFDVETA
IRVCRSANYHEHAMYVAKKAGRHEWYLKILLEDLGNYEEALEYISSLESSQAGMTIKEYG
KILIEHKPSETIQILIRLCTDEGDKRGRSNGVYVSMLPSPVDFLSIFVHHPHSLMDFLEK
YTNKVKDSPAQVEINNTLLELYISNELNFPSVSQSNEGADYLNVASGKTLNASAQTNGTI
ADHKSSEKEKGRLERREKGLRMLKSAWPPETEHPLYDVDLAIILCEMNAFKDGLLYLYEK
MKLYKEVVACYMQAHDHEGLIACCKRLGDSIKGGDPYLWADVLKYFGELGEDCSKEVKEV
LNYIERDNILPPIIVLQTLSKNPCLTLSVIKDYIARKLEQESKIIEEDRQAIEKYQEDTQ
TMRKEVQDLRTNARIFQLSKCTACTFTLDLPAVHFMCMHSFHLRCLGDNEKECPECAPEY
KSVLEMKRNLEQNSKNQDRFFQQVKNSTDGFSVIAEYFGKGIISKTSNGSTSGLRSGNAS
SSSGF
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgtatcagtggaggaagttcgaattcttcgaggagaagtacgtttcaaaatgcacgatt
ccagaggaagaagatgaagatgaaagagagaaagatagggagaggaaaatcgagtgctgt
tcgagtggaaggggtaaggtggttactggttttgatgatggaaccgtttgcttgttcgat
cgaggtctcaaattcaattacgcttttcaacctcactcttcttctgttctctttcttcaa
cacctcaagcaacgcaacttcctggtaacaattggggaagatgaacaacttactcctcag
caatcagctttgtgcctgaaggtttttgacttagataagatgcaatctgaaagtacaagc
acggcgagtcctgattgtgttgggatattgcgtatattcactaatcagtttcctgaggca
gtgattacatcttttattgtcttagaggaagtgcctcctatactcctcatagctattggc
ttaaacaatggttctatttactgcatcaaaggagatattgcacgggagcgtatcacccgt
ttcaagcttcaggtggaaaaccattcagacaaaactcattcctcaatcactggtcttggg
ttcaaagtggatggtcaaacacttcagttgtttgcggtaaccccaagttctgtgagcttg
ttttcattgcatgatcaaccgccaaggaggcaaacgcttgatcagattggatgtggtata
aacagcgttgcaatgagtgaccgttctgagtttataattggtcggccagaggcagtatat
ttttatgaagttgatggacgcggtccttgttgggctttcgagggagaaaagaagttggta
ggatggtttcgtggataccttttgtgtgttattgcagatcaaagaacaggaaagcatact
ttcaacatatatgacctgaagaatcgtttaatagcccacagtgctctggttaaagaagtt
tctcatatgctctatgaatggggtaccatcatactcataatgacggacaaatcaacctta
tgtattggggaaaaggatatggaaagcaagttagacatgttattcaagaaaaatctatat
actgtagcaattaatcttgttcagactcaacaagcagatgctgcagctacttctgaagtt
ctgagaaaatatggagatcatctatacagcaagcaagactatgatgaggcaatggcccag
tacataaataccattggtcagcttgaaccttcgtacgtgatacaaaagtttttggatgct
caaagaatctacaacctcacaaattacttggaaaagctacatgaaaaggggcttgcttct
aaagatcacaccacacttctattaaactgttacaccaagttgaaagatgttgaaaaacta
aatctatttattagaagtgaagacagcattggggaacttaagtttgatgtggaaacagca
atcagggtttgccgttctgccaattaccatgagcatgcaatgtatgttgcaaagaaggca
gggaggcatgaatggtacttgaagattttgcttgaagatcttggtaattatgaagaggcc
ttggaatatatttctagtctggaatcaagtcaggctgggatgacaataaaggagtatggt
aaaattctaatagagcataagccatcagagacaattcagattctcattaggctttgcaca
gatgagggtgacaaaagaggtcggtcaaatggtgtgtatgtgtctatgttgccatctcct
gttgattttctcagcatcttcgttcatcaccctcattcccttatggattttcttgaaaaa
tataccaataaggtcaaggactcgcctgctcaggtggagattaacaatacccttttagag
ttgtatatatccaatgaattgaactttccttcagtatcacagtctaacgagggtgcagat
taccttaatgtagcatcaggaaaaactttgaatgcgagcgcccaaaccaatggaactatt
gctgatcacaaaagttcagaaaaggaaaaaggccgtcttgaaaggcgtgaaaagggtcta
cgcatgcttaagagtgcatggcctccagaaacagaacatccactttatgatgttgatcta
gctattatactatgtgaaatgaatgcattcaaagatgggcttttgtatttgtatgaaaag
atgaaactctataaggaagtagttgcttgctatatgcaggcgcatgatcatgagggctta
attgcatgctgcaaaagactgggtgattcaattaaaggaggggatccatatctctgggca
gatgtactcaaatattttggtgagcttggagaagattgctccaaagaagtaaaagaagtt
ttgaattacattgaaagggataatattttgccccccataattgtccttcaaactctgtca
aaaaatccttgcctcacactttctgtgatcaaggattacattgctcggaaacttgagcag
gaatcaaagataattgaggaggaccgacaagctattgagaaatatcaggaagacacacag
acaatgaggaaagaggttcaagatcttaggacaaatgcgaggatttttcagcttagcaag
tgcacggcatgcactttcaccctagatcttcctgctgtgcatttcatgtgcatgcactca
ttccatttgcggtgccttggcgataatgaaaaagaatgccccgagtgtgccccagaatat
aagtctgtcttagaaatgaaaagaaatttagagcaaaattctaagaatcaggacagattt
ttccagcaagttaagaactccacagatgggttttctgtcattgctgaatattttggaaaa
gggattatcagcaaaacaagcaacggatccacttcgggtctcagatctggaaatgcatca
tcaagtagtggcttctga
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