Trifolium pratense (red clover): 123898037
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Entry
123898037 CDS
T08949
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123898037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123898037
04121 Ubiquitin system [BR:
tpra04121
]
123898037
03036 Chromosome and associated proteins [BR:
tpra03036
]
123898037
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123898037
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
123898037
Ubiquitin system [BR:
tpra04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
123898037
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
123898037
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
123898037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-HC5HC2H
BRCT_2
BRCT
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-HC5HC2H_2
zf-RING_6
zf-C3HC4_3
zf-C3HC4_4
zf-RING_UBOX
zf-RING_5
PHD_NSD
zf-RING_10
RTT107_BRCT_5
Motif
Other DBs
NCBI-GeneID:
123898037
NCBI-ProteinID:
XP_045804839
LinkDB
All DBs
Position
LG7:complement(35717044..35722922)
Genome browser
AA seq
995 aa
AA seq
DB search
MENLERMGRELKCPICLGLIHSAVSLTCNHLFCNSCIIKSMKSAFSCPVCKIPFARREIR
PAPQIDSLVTIYKNMEAASAINLFGTQNPPATKSPDEDKQCKGDYKSGEKGTGGTHENHP
EEEITPKRKKLAKKLQASTKSSASNRAEPSFPAKKRVQVPQDILSETPMRNLKSGGSVSL
INKEGTQKASTKGNKMEIQSEKGDQVKEPFFWLREEKDGEMLSQQSSEDLIIEGSSPVLP
SFSDLQDANDDSPSKQAPSDEVQNKPSFDLFDSEMFEWTQKPCSPELFSSPIKMQVEDTF
ENDENIEELVAGTQEHQLSADAYNINFENPVGNQLADVLPQGVSSQISSDDLNGKKKTTK
RSRKAREKSKEDKIWEQKCQNDEMNLDSNIKSKDIEDQSLDNKHRASNLKKSNRKGKKVS
FIISTDSTPQTACTVSNISGVQSKGRRMTAKNLYTSASKQDNEIQCSQKIAGKSQVRRSG
NQRLDVVHEPPEDLTSVQNQCKELARSASSTLGLQMDDNRKDANIGKRKSSLSRNSMLCS
KERKSAKKPKISTEFISRTKNDEEIKSNESVKQGTDVRPLNDSSKEKQCNLTDQPVLKKC
VNHVKDYQCAFCLSSEESEASGPMVHYFDGKPVTADYERGSKVIHCHRNCTEWAPNVYFE
DDNAINLEAEISRSRRIKCSFCGLKGAALGCFEKSCRRSFHVPCAKWTPECRWDMENFVM
LCPVHSSSMLPYESSGSQHRSKILTASKVKSCSRKHDTTSQSRVTHGSHKKIVLCCSALS
VQERDVVSDFERVSKVTVLKTWDSSVTHVIASTDENGACRRTLKVLLGILEGKWILSIEW
IKACMKDTGPVDEERYELNVDIHGIRDGPRLGRQRALNKQPKLFDGYKFYFMGDFIPSYK
GYLQDLVIAAGGTVLHRKPVSGDHQAIPPDMHPHQTLIIYSLELPAKCNPLEKDAIFSQR
RCDAEVLARPAGSKVASNTWILNSIAGCKLQSLPQ
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatcttgaaagaatgggtagagaactcaaatgtccgatctgtttgggtttaatt
cattccgctgtttcactcacctgcaatcatcttttctgcaactcttgtataattaagtca
atgaaatctgcattttcttgtccggtttgtaaaatacccttcgctcgtcgagagattcgt
cctgctcctcaaattgacagcttggtcactatctacaaaaacatggaagctgcttctgca
attaatttatttggaactcaaaatccacctgctaccaaatcaccagatgaggacaagcaa
tgtaaaggggattataagtctggtgagaaaggaactggtgggactcatgaaaatcatcct
gaggaggaaataacccccaaaagaaagaagttggcaaagaagcttcaggccagcacaaaa
agttcggcttctaaccgtgcagagccttcttttccggctaagaaaagggttcaggtgcca
caagatatcctttcagaaactccaatgaggaatttgaaatcaggaggctctgttagtcta
attaacaaagagggaacacaaaaggcttcaaccaagggaaataaaatggaaattcaaagt
gaaaaaggtgatcaggtgaaagaaccattcttttggttaagagaggagaaggatggtgaa
atgttaagtcaacagtctagcgaggatttaattattgagggttcttcaccagttcttcct
tcattcagtgatctccaagatgctaatgatgacagcccttcaaaacaagctccatcagac
gaggtgcaaaacaaaccatcttttgatttatttgatagtgagatgtttgaatggacgcaa
aagccatgctcacccgaattattttcaagtcccatcaaaatgcaggttgaggatactttt
gagaatgatgaaaatatagaggaattagtggcagggactcaggagcatcagttaagtgct
gatgcttacaatataaactttgagaatcccgtaggcaatcaattggctgatgtgttgcca
caaggtgtctcctctcaaataagttctgatgatctaaatggaaaaaagaagactacaaag
agaagtaggaaggctagagaaaaatctaaggaagacaagatttgggaacaaaaatgtcaa
aatgatgaaatgaatttggattcaaatataaaatcaaaagatattgaggatcaatcattg
gacaacaagcacagagcttctaatctgaaaaagtctaatagaaagggcaagaaggtttct
ttcattattagtacagattcaacaccacaaaccgcttgtacagtctccaatatatcagga
gttcaaagcaaaggtagaagaatgaccgctaagaatttatatacttctgcatctaaacaa
gataatgagatacaatgttctcagaagattgctggaaaaagtcaggtgagaagatctgga
aatcaaaggctggatgttgtgcatgaaccacctgaagatttaacttcagtgcaaaatcaa
tgcaaagagcttgctagatctgcttcatctactttaggtctgcagatggatgataatagg
aaggatgctaatattgggaaaagaaaaagcagtctgtccagaaattctatgctttgcagt
aaagaaaggaagagtgctaaaaagccaaaaatttctactgaatttatctctaggactaaa
aatgatgaagaaattaagtcgaatgaaagtgttaagcaaggtactgatgtcaggcctttg
aatgattcttcaaaagagaaacagtgcaatttgacagatcaacctgttttaaagaaatgt
gtgaaccatgtcaaagactatcaatgtgctttctgtctctcatcagaagaatcagaggct
tctggcccgatggtgcactattttgatggcaaacctgtaactgctgattatgaacgagga
tctaaagtcatacattgtcacaggaattgcactgaatgggccccaaatgtatattttgaa
gatgataatgcaataaaccttgaagctgaaataagtagaagtcggagaatcaaatgtagt
ttctgtggacttaaaggagctgcacttggttgctttgagaaaagttgtcgaaggagcttt
catgttccctgcgccaagtggactcctgaatgtcgatgggatatggaaaattttgtcatg
ttatgccctgtgcattcctcctccatgttgccgtatgaaagttcaggatcccaacacagg
agcaagatactcacagctagtaaggttaaaagctgtagccgcaaacatgacactacaagc
caaagtcgtgttactcatggatctcacaaaaaaattgtgctgtgttgttcagctctatct
gtacaagagagggatgttgtttctgattttgaaagagtgtccaaggttacagttttgaaa
acttgggattcaagtgttacccatgtaatagcatcaacagatgaaaatggggcatgcaga
aggactctcaaagtattgttgggtattctagaaggaaagtggattctcagcattgagtgg
atcaaagcttgcatgaaagatacaggacctgttgacgaagagcgttatgaacttaatgtt
gacatccatggaattagggatggtccccgtcttggacgacaaagagcattgaacaagcaa
ccaaagctttttgatggctacaagttctatttcatgggtgattttatcccatcatacaag
ggttatctgcaagaccttgtgattgcagctggagggacagttctgcatagaaaaccagtg
tcaggtgaccatcaagcaattccacctgatatgcatccacaccaaaccctcataatctac
agtcttgagcttcctgctaaatgcaatcctttggaaaaggatgcaatttttagccaaagg
cgatgtgatgcagaggttttggcaaggcctgctggttcaaaggttgcaagtaacacatgg
attttgaattcaattgctggctgcaagctgcaaagccttcctcaataa
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