Trifolium pratense (red clover): 123898225
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Entry
123898225 CDS
T08949
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123898225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123898225
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123898225
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
123898225
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
123898225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
Motif
Other DBs
NCBI-GeneID:
123898225
NCBI-ProteinID:
XP_045805082
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All DBs
Position
LG7:complement(31492418..31502091)
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AA seq
688 aa
AA seq
DB search
MEDSEGVLNFDFEGGLDAQQPPAAIASASVPAAPSGPIIQPDSYLPQPSNAPNGATNAPS
VTEPVSGNVPGRRSFRQTVCRHWLRSLCMKGEACGFLHQYDKARMPVCRFFRLYGECREQ
DCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPIEEVLQKIQHLYSYNYNNS
HKFIQQRGSNYNTQQADKPQFPQGINSANQGAVAKPLASESGNVQQQQQVQQQSQPQVSQ
NQVQNLANGQPIQANRTSTPLPQGVSRYFIVKSCNRENLELSVQQGVWATQRSNESKLNE
AFDSVENVILVFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLC
ELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYTEPDSELMAISIAAESKR
EEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEDESFGQAVGPAVQGRGRGRGMMWP
PHMHMGRGARPMHGMQGFNPVMMGDGLSYGPGGPDGFGMPDLFGMGPRGFGPYGPRFSGD
FGGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVPGPNGPRGGRPVNMPPMF
PPPPPPPQNMNRPKRDQRTSDRNDRFGSGPDQGKSQDMLSQSGGPDDDMQYQQGYKSQQD
ERNDDSESEDEAPRRSRHGEGKKRKGEA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggaggattccgaaggagtcctcaacttcgatttcgaaggcggactcgacgcacaacaa
cctcccgccgccatcgcatccgcctccgttcccgccgcaccttccggtcctattatccaa
cccgattcatacttaccacaaccttctaatgctcccaatggtgctaccaatgctccttcc
gttactgaaccggtttctggtaatgttcctggaagacgaagcttccggcaaacggtttgt
cgtcactggcttcgtagtttgtgtatgaaaggtgaagcgtgtggattcttgcatcagtat
gataaggctcggatgccggtgtgtcggttttttcgattgtatggagagtgtcgtgagcaa
gattgtgtttataagcatactaatgaagatatcaaggagtgtaacatgtacaagttagga
ttttgtcctaatgggcctgattgtcgatacaggcatgcaaaatctcctggacctccgcct
ccgattgaagaggtccttcaaaagatccaacatttatattcttacaactataacaattct
cacaaatttatccaacaaaggggttctaattataatactcaacaagctgataagcctcag
tttcctcaaggaattaattctgcaaaccaaggtgcggttgcaaaaccattagcttcagag
tctggaaatgtccagcagcagcaacaagttcaacaacagtctcagccgcaggttagccag
aaccaagtgcaaaatcttgctaatggccaacccattcaagccaatcgaacgtcaacccct
ttacctcaaggagtatctaggtattttattgttaagagttgcaatcgtgaaaatttggag
ttatctgttcaacaaggagtatgggcaactcaaaggagcaatgaatcaaaactaaatgaa
gcatttgactctgtggaaaatgtgatattggttttctcagtcaaccgtactcgacacttc
cagggctgtgcaaagatgacatccagaattggtggttctgttgctgggggaaactggaaa
tatgctcatggaacggcacattatgggcggaatttctctgttaaatggttgaagttatgt
gaactttcattccacaaaacacgccatttgagaaatccatacaatgagaacttaccagtg
aagataagcagagattgtcaggagctggaaccttcaatcggtgagcagttggcatccttg
ctgtatactgagccggatagcgaacttatggctatctcaattgcagcagagtctaaacga
gaagaagagaaagcaaagggagtgaatccagataatggaggagaaaatccagacattgtc
ccatttgaagacaacgaagaagaggaagaggaagaaagtgatgaagaggatgagagcttt
ggtcaagctgtaggaccagctgtccaaggaagaggtaggggaagaggaatgatgtggcct
ccccacatgcatatggggcgtggagccagacccatgcatggaatgcaaggttttaaccct
gtaatgatgggcgatggattatcctacgggcctggtgggcctgatggttttggtatgcca
gatctttttggcatgggtccccgaggttttggtccatatggtcctaggttctctggtgat
tttggaggccccccagctgccatgatgttccgaggacgaccctcacaacctgggatgttt
ccaggtggtggatttgggatgatgatgaatcctggacgcggtccctttatggggggaatg
ggggttccaggtccgaacggaccaagaggtggtaggccagtcaatatgcctccgatgttt
ccaccacctccgcctccaccacaaaatatgaaccgccctaaaagagatcaaagaacaagt
gaccggaatgataggttcggttcaggaccagatcaaggtaagagtcaagacatgctcagt
caaagtgggggtcctgatgatgacatgcagtatcaacaaggatataagtcacagcaggat
gaaaggaacgacgatagtgaaagtgaagatgaggcacctaggcggtcaagacacggagag
ggaaaaaaacgaaaaggcgaagcttag
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integrated database retrieval system
