Trifolium pratense (red clover): 123898260
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Entry
123898260 CDS
T08949
Name
(RefSeq) endoribonuclease Dicer homolog 2-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpra03036
]
123898260
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
123898260
microRNA pathway
RISC loading complex
123898260
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
Dicer_dimer
PAZ
SWI2_SNF2
Nlig-Ia
Cas3-like_C_2
dsrm
Flavi_DEAD
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
123898260
NCBI-ProteinID:
XP_045805121
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Position
LG7:30840187..30853094
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AA seq
1389 aa
AA seq
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MSSSKIMEEALMEMDGYGEQQIMPDALPFARSYQLEALDKAIRENTIVYLETGSGKTLIA
IMLLRSYAYHLRKPSPNIAVFLVPKVVLVSQQAKALKNHTDLKVGMYWGDMGVDYWDGAM
WKAEMEKHEVLVMTPAILLSCLRHSFIKLKMIKVLIMDECHHTSGKHPYACIMTEFYHHQ
LRSGITELPRIFGMTASPIKSKAANSESTLSKNILELMTLMHSKVYTCISDAVLSQFIPT
STPKFRYYKDNIISDALFEELAQKLLALKQKHELYVTSSDFTKSAIESAHKKIARIFTSS
IFCLDDLGVWLALKAAESLSSIEIENFLWGNSGDQIVKKFSSATMLTLQSYVPSDPQWTI
GYNMDSDVKMGLLTSRVSCLIDCLLEYRGFTEMRCIVFVERVITAVVLEVLLNTLLPKYN
SWRAKCIAGNSSRLQHQSRKTQNEIVEEFRMGLVNIIVATSILEEGLDVQSCNLVIRFDP
CPTVCSFVQSRGRARMQNSDYILMVNSGDFDTRSRLEKYLGGSQMMRKESLRQSSLPCES
LEIDQFQEQAYRVASTEAVVNLSSSITLIYLYCSRLPSDGYFKPTPRWDKEKGILYLPKS
CPLQAIHVQGETKFLKNIACLEACKQLHKIGALTDYLVPSIVIEEAEVEEFGNEPYDEEQ
PSYVPFELVNRVSNNSNTMYYCYLIELKQNFSYDITVKDIFLATRVTLEPEIGCMQFDMC
FDKGSLSVKLNYKESITLSPDQVLLCKRFQANVLGILTNNKMDKESVLDKCCSEDDYDID
YLLLPSIDREQTTVVDWLTINSVHPSEIGCLHPVANIWTEKGLVCGCILQNALIFTPHNG
RTYITTNIMELDGNSPLEVGDGEVTTYRKFFGQKHGIQLRYEHQRLLKARQVFSVKNYCH
GSRQTKDRDASKTYVELPPELCSIIMSPISVDTLYSFSYIPSIMHRLESLLGAFNFKKMH
LDHCPQNRIETFKVLEAMTRKSCNETFHYESLETLGDSFLKYAVSQQLFNTYQNHHEGLL
SVKREKIICNAALCKLGCGFKLPGFIRNEPFDPNTWIIPGAKSRSFKLEEIVCNGRKIYT
RPNRKLRRKVVADVVEALIGAFLSAGGEVAALLFMDWIGIKVNFNITPYERQFNACPENI
VNVGFLESLLKYTFRDHSLLVEALTHGSYMLPEVPRCYQRLEYLGDSVLDYLITMHLYKE
YPGMSPGQLTDMRSASVNNDCYAWCAIKVQLHKHVLHTSQELHKHIVATLDKYDELSSAS
TFGWESEASFPKVLGDVIESLAGAILVDSGYDKEVVWQSIRPLLEPLVTPDTLTIHPVRE
LSELCQKMKYTRKKLYQNDNGVTSCRVEVIADGIIHQYEHKGFTNRKTAKRLACKGVLNS
LQLKETQDK
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatcaaagattatggaagaagctcttatggaaatggatggatatggtgagcag
cagattatgcctgatgctcttccatttgctagaagttatcagcttgaagcattggacaaa
gcaattcgcgagaataccatagtgtacttggagactggatccggaaagacattgatagcc
atcatgcttcttcgaagctacgcttatcacctccggaagccttctccaaacattgctgtt
tttttggttcccaaagttgtattggtttctcagcaagctaaagccttgaaaaaccacact
gacttaaaggttggaatgtattggggagacatgggtgttgactattgggatggagctatg
tggaaagcagagatggagaaacatgaggtgcttgtcatgactcctgcaatattgctttct
tgcttgaggcatagctttatcaaactgaaaatgataaaggttttaataatggatgaatgc
catcatacttcgggtaaacacccatacgcttgtatcatgaccgaattttatcatcatcag
ttaagatctggtatcaccgagcttcctcgaatttttgggatgactgcatcaccaattaag
tcgaaagctgcaaattctgaatctaccttgtcaaaaaatattctggaactaatgactcta
atgcattcaaaggtttatacctgtataagtgatgctgtcctatcacagttcataccgaca
tctaccccaaaattccggtattacaaggacaacatcatttcagatgcgttatttgaagaa
ttagctcaaaaactcctcgccttaaaacaaaagcatgagctttacgtcacaagttcagat
ttcacaaaatcagctattgaatctgcacacaaaaaaatagcaaggatttttacttcctca
atattttgcttggatgatcttggtgtttggttggctttgaaggctgcggaatccttatct
tcaattgaaattgaaaatttcttatggggtaactctggcgatcaaattgtaaaaaaattt
agttcggctactatgctgaccctgcaaagttatgtaccatctgatcctcaatggactatt
ggttataatatggattccgatgtgaaaatggggttattgacatcgagagtgtcttgtctt
attgactgtctacttgagtatcggggttttactgaaatgagatgcatagtgtttgtggaa
agggtcattacagccgttgtccttgaggttctattaaacactttgcttccaaaatacaat
agctggagggctaaatgcattgcaggaaacagcagtagattgcaacaccaatcaagaaaa
actcaaaatgagattgtggaagaatttcgtatgggattggtcaacatcattgttgcaaca
tcaattcttgaagagggtttagatgttcaaagttgcaatttggttattagatttgaccca
tgtcctacagtgtgcagttttgtacagtcccgaggtcgtgctagaatgcaaaattcagat
tacatattgatggttaacagcggcgatttcgatacacgttctcgattagagaaatacctt
ggtggttcccaaatgatgaggaaggagtctttgcgacagtcttcccttccatgtgagagt
cttgaaattgatcaatttcaggagcaagcttatcgtgttgctagcactgaagctgttgtg
aatcttagttctagcattactttgatatacttatattgctcacggctcccttcagatggg
tactttaaaccgacgccaaggtgggacaaagagaaaggaatattgtatcttcctaagagc
tgtcctctacaagctattcatgtacaaggtgaaacaaagttcttaaagaatattgcatgc
cttgaagcatgcaaacaacttcataagattggagcgttgacagactaccttgttccttct
attgtcattgaagaagcagaggtggaggaatttgggaatgagccatatgatgaggaacag
ccaagctatgtaccatttgaattggtaaatcgcgtgtcgaacaatagcaacacaatgtat
tattgttatttaatagaactaaaacaaaattttagctatgatatcaccgtgaaagacatt
tttcttgcaactagagtcacgcttgaaccagaaatcggatgcatgcaatttgacatgtgt
ttcgacaaaggtagcttgtctgtgaaattgaattacaaagaaagcattactctctcaccg
gatcaggttcttctttgtaaaagattccaggctaatgtccttggaattcttacgaataat
aaaatggataaggaatctgttttagacaaatgttgttcggaagatgactatgacattgat
tatcttctgctcccatctatcgatagagagcaaacaacagttgttgattggttaacgatt
aattctgtacatccatctgaaattgggtgtctgcaccctgtagccaacatatggaccgaa
aaaggtttagtttgcggttgcatattgcaaaatgctttgattttcactccacataatggc
cgtacctacatcaccactaatataatggagttggatggaaactcacctctagaagtagga
gatggtgaagttactacgtacaggaagtttttcggacagaagcacggcattcaattgcgt
tatgaacatcaacgcctacttaaagcaagacaagttttttctgtcaaaaattattgtcat
ggaagcagacaaacgaaagacagagatgcgagcaagacttatgttgaattaccacccgaa
ctatgctctataatcatgtcaccaatttccgttgatacactttattctttttcatatatt
ccatcaataatgcatagacttgagtcattgcttggagctttcaacttcaaaaagatgcat
ttggatcattgtccgcaaaacaggattgaaacattcaaggtcttggaagcaatgaccaga
aagtcatgcaatgagaccttccattatgagtcactagagacactaggagactcttttcta
aaatatgctgttagtcaacagctttttaatacatatcaaaatcaccacgagggtcttctc
agtgtgaagagggagaagatcatttgtaatgcggccctctgtaagctaggttgcggtttt
aaacttccgggcttcatacggaatgagccttttgatcctaacacctggatcattccagga
gctaaatcaaggagttttaaattagaagagattgtttgcaatggaagaaaaatttatacc
cgtccaaatagaaagttgagacgaaaagttgttgctgatgtggttgaagcactaattggt
gccttccttagcgctggtggtgaggtggctgcattgttgttcatggattggattggtata
aaagttaattttaatattacaccatatgaaaggcaattcaatgcttgtcccgagaatata
gttaatgtcggctttctagaatccctactgaagtacacatttagggatcattctctgtta
gtagaagctttgacgcatggttcttacatgctgcctgaggttcctagatgctatcagcgg
ctagaatatttaggagattcagtattggattatctcattacgatgcatttgtataaagaa
tatcccggcatgtcacctgggcaattaactgacatgaggtcagcatctgtgaataatgac
tgttatgcatggtgtgccataaaggttcaattgcataaacatgtactccatacctcccag
gagttgcataaacatattgtcgctacactagataaatacgacgaactatcttcagcatca
acttttggatgggagtccgaggcatcattccccaaggtacttggcgacgtcatagagtct
ctagctggtgctatactcgttgattcaggatacgacaaggaggttgtgtggcaaagcata
aggcctcttttggaaccacttgtgacacctgatacattaacgattcatcccgttagagaa
ttatctgaattgtgccagaaaatgaaatataccaggaagaagttgtaccaaaatgacaat
ggtgttactagttgtagagtcgaggtaattgcagatggcataattcatcagtatgagcac
aaaggttttactaataggaaaactgccaaaagactagcctgcaagggagttttgaattcc
ttgcagctgaaggaaacacaagacaaatga
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