Trifolium pratense (red clover): 123898579
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Entry
123898579 CDS
T08949
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123898579
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123898579
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123898579
mRNA degradation factors
5'-3' decay
Decapping complex
123898579
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40_WDHD1_1st
WD40
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_TEP1_C
Beta-prop_HPS5
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_Vps41
GerPC
RH3_dom
SipA
CelTOS
Motif
Other DBs
NCBI-GeneID:
123898579
NCBI-ProteinID:
XP_045805523
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All DBs
Position
LG7:complement(32295391..32304546)
Genome browser
AA seq
1359 aa
AA seq
DB search
MASSGNSANPNQTQQTQFDLQKLFKVTTTNQNQNQNLNSSPSFPSPSSLSTPPPSSYPTP
SSSYPPPTGTYPYHLPHYLPFPNLQQENPLIHQHHPQMHAPQRPIFQPSSSPTSPNPNTT
SGARLMALLGTQSQNPPSNQESEFSVSSNPGSVVTSVSSPGNMASPNSTPTRMLSTKLPK
GRHLKGENVVYDIDVKLPGEMQPQLEVTPITKYASDPGLVLGRQIAVNRSYICYGLKLGA
IRVLNINTALRYLLRGHTQRVSDMAFFAEDVHLLASASTDGRIFIWKINEGPDEEDKPQI
TGRVILAIQILGESESVHPRVCWHPHKQEILIVAIGNRILKIDTMKAGKGETFSAEEPLK
CNIDKLIDGVQLIGKHDDNITELSMCQWMKSRLASASADGTVKIWEERKATPLAVLRPHD
GKPVNSVTFLTAPHRPDHIVLVTAGPLNQEVKIWVSGYEEGWLLPSDSESWICVQTLDIR
SSSETNPEDAFFNQVVALPRAGLVLLANAKKNTIYAVHIEYGPNPTATRMDYISEFIVTM
PILSLIGTSDSLPDGDHLVQIYCVQTQAIQQYGLNLSQCLPPPLDNVELEKTEASVSRAW
DGSTDLETVNIPQVQLSTSESAVNLSSTDIHGLPEGSVSDTETKPNDLPSHNGFEHVHAA
PPPLPPSPRLSRKLSGTKSSNILATSSTSAGDHSNEPTNLDSSADQRIESEKDSVADVPA
SGDSLQESDRVVQNDVSDSPTIFKHPTHLVTPSEIFSKAALSPANSNISQGMNVQGVAAH
SDAEKFEVEVKVVGESETASNQENTEYDIDSHTNVAEKKEKLFYSQASDLGIQMARDTYN
IEGVRQADNTNTIDAPDKNRTSIEEEVQETSKEVPANIRESEVVAATLQSPAPSTKGKRQ
KGKGSQVPGTSSTSPSPFNSADSANDQGGNSAAPSVEAALPQLSTVHEMMGQLLNMQKEM
QKQMNVMVSVPVTKEGKRLEGSLGRSMEKVVKANADALWARIQEENAKKEKLERDHVQQI
TNLISNYINKDMSSLLEKIIKKEVSSIGTTITRSLSQNLEKAISTAVTESFQKGVGDKAL
NQLEKSVSSKLEATVARQIQVQFQTTGKQALQEALRTSVEATLVPAFEKSCKAMFEQIDG
TFQNGLLNHTTAIQQQYDSTHSPLAITLRETINSASSITQTLSGQLADGQRKLLEMAANS
KVAADPFVTQINNGLHEMTEDPTKELSRLISEGKFEEAFTGALHRSDVAIVSWLCSQVDL
TGILTMVPLPLSQGVLLSLLQQLSCGINTETLKKLQWMTDVAAAINPADTRIAAHVRPIL
DQVYRTLGHHRNLPTNSPSEASNIRLLMHVINSVLLSCK
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atggcttcttctggaaattctgcaaatccaaatcaaacccaacaaacccaatttgattta
caaaagcttttcaaagtaacaacaacaaatcaaaatcaaaatcaaaatttgaactcttct
ccttcattcccttcaccttcatcactttctacaccccctccttcttcttatcctacacct
tcttcttcataccctccaccaactggtacatacccttatcatcttcctcactatcttcct
tttccaaatcttcaacaagaaaaccctcttattcatcaacatcatcctcaaatgcatgca
cctcaaagacccatttttcaaccttcttcttctcctacatcaccaaatccaaacactaca
tctggtgcacgtttaatggctttgttagggactcaaagccaaaaccctccttcaaatcaa
gaatctgaattttcagtttcatcaaaccctggttcagttgtgacttcagtttcttctcct
ggtaacatggcaagtccaaattctacaccaacaaggatgcttagtactaagcttccaaag
ggtagacatttgaaaggagagaatgttgtttatgatattgatgttaagttgccaggtgaa
atgcagcctcaactcgaggttacgccgattactaagtatgcatctgatcctggacttgtg
cttgggagacaaattgctgttaatagatcttatatatgttatggacttaaactcggtgct
attcgggttcttaatattaatactgctttgagatatttgcttcgaggtcatactcagagg
gtatccgacatggctttctttgctgaggatgttcacctgttagccagtgctagcactgac
gggagaatttttatatggaaaatcaatgagggccctgatgaggaagacaagcctcaaatt
actggaagagttatcctagccattcaaatattaggagagagtgagtcagttcatccacga
gtatgctggcatccacataaacaagagattttaattgttgctattggaaaccgtatcctc
aaaattgacactatgaaagctggaaaaggtgaaaccttttctgcagaggaacctctcaaa
tgtaacattgataagttgattgatggcgtgcaacttatcggtaagcatgatgacaatatc
accgagttgtcaatgtgccaatggatgaagagtcgattagcttcagcatcagcagatggc
acggtgaagatatgggaagaacgtaaggcaacaccacttgctgttttaagaccacatgat
ggtaaacctgttaattccgtgacgttcttgactgctcctcaccgcccagatcacatcgtt
cttgtcacagcgggcccactaaatcaggaagtgaagatatgggtatctggttacgaggaa
ggttggttattgcctagtgattctgagtcatggatttgtgttcagactttggatataaga
agttcttctgaaaccaaccccgaggatgcattctttaatcaagttgtagcgttgcctcgt
gctggtttggttctgctagcaaatgccaagaaaaatacaatatatgctgtgcatatagag
tatggacccaatccaactgctactcgcatggactatatttccgagttcatagtcacaatg
cctatattaagccttattggaactagtgatagtttaccagatggagaccatcttgttcag
atatattgtgtccaaacacaagctattcaacagtacggactcaatttgtcacaatgtttg
cctccgccactagacaatgttgaacttgaaaaaacagaagcaagtgtatctcgtgcttgg
gatggatctactgatctggaaactgttaacataccacaagttcagctgagcacttctgaa
agtgctgtaaatttatcttctacagatattcatggtcttcctgaaggttctgtgtcagat
actgagaccaagccaaatgatttaccttctcataatggttttgagcatgtccacgctgct
ccacctccacttcctccgagtccaagactgtctcgcaagttatctggtaccaaaagttct
aatattttagcgaccagctcaacaagtgccggtgatcacagcaatgagccaacaaatctt
gattcttctgcagaccaaagaatagagtctgaaaaagatagtgtggctgatgtgcctgca
tcgggtgacagtttgcaagaaagtgacagagttgtacaaaatgatgtttctgattcccct
acaatatttaaacacccaactcatttggtaactccatctgagatattctctaaagctgct
ttgtctcctgctaattccaatatctctcaaggtatgaatgttcaaggtgttgctgcacat
agtgatgcagaaaagtttgaagtagaagttaaagtagtaggtgagagtgagactgcttct
aatcaagaaaacactgagtatgacatagactcccacaccaatgttgctgagaagaaagag
aagttattctactctcaggcttctgatcttggcattcagatggctagagacacctataat
atcgagggagttcgtcaggctgataatactaatactattgatgcacctgataaaaaccgt
acatcaattgaggaagaagttcaagagacgagtaaggaggtacctgcaaatatcagggaa
tcagaagttgtagctgcaactttgcagtctccagcaccatccacgaaaggtaaaagacag
aagggtaaaggttctcaagttcctggtacatcttccacttctcccagcccttttaattca
gcggattcagcaaatgatcaaggcggaaattcagcagccccgtcggtggaggctgcttta
ccacaattatctactgtgcacgagatgatgggccagctattaaacatgcaaaaggaaatg
caaaagcagatgaatgtgatggtttcggtcccggttactaaggaaggcaaaagattagaa
gggtcattgggtcgaagcatggagaaggtagtcaaggctaacgccgatgctttgtgggct
cgcatacaagaagaaaatgcaaagaaagagaaattagagcgagaccatgtgcagcaaata
acaaatttgatctccaattacataaacaaggacatgtcatctctattggagaaaatcatt
aagaaggaagtatcttcaattggaacaaccattactcgttcacttagtcaaaacctagag
aaagcaatatcaacagctgttacagagtcattccagaagggggtcggagacaaagcatta
aaccaactagaaaagtcagttagttcaaaacttgaagctacagtggctaggcagatacaa
gtacaatttcaaactactggcaaacaggctcttcaggaagcacttaggactagtgtggaa
gctacattagttcctgccttcgagaagtcttgcaaagctatgttcgagcaaattgatggc
acttttcagaatggtcttttgaaccacacaactgctattcaacagcagtatgattctact
cattctccgctagccataactttgagggaaacaattaattcagcatcatcgatcactcaa
actttgagcggacaattagctgatggccaacgtaaattgttggaaatggcagctaattcc
aaagtggctgctgatccttttgtaacacaaatcaacaatgggttgcatgagatgaccgag
gatcctaccaaagaactatcaaggttaataagtgagggaaaatttgaggaagcgtttact
ggagctcttcatagaagtgacgttgcaatagtttcttggttatgttctcaggttgattta
accggtatcttgacaatggtaccattgccattaagccaaggagtacttttatctcttcta
caacaattatcctgcggcatcaatacagagacactaaaaaaattgcaatggatgacagat
gtagctgctgctataaaccctgcagatacgaggattgcagcgcatgtgcggccaatattg
gatcaagtgtaccgaacactaggccatcatcgcaatttaccaacgaattccccttcagaa
gctagcaatatccgccttctcatgcatgtcataaactcggtgttattgagctgtaaatga
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