Trifolium pratense (red clover): 123898603
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Entry
123898603 CDS
T08949
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123898603
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123898603
03009 Ribosome biogenesis [BR:
tpra03009
]
123898603
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123898603
Spliceosome [BR:
tpra03041
]
Complex A
U2 snRNP components
U2 related factors
123898603
Complex B
123898603
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
123898603
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
90S particles
Helicases
123898603
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
SRP54
ResIII
nSTAND3
ABC_tran
T2SSE
Flavi_DEAD
AAA_7
FtsK_SpoIIIE
AAA_29
AAA_30
Motif
Other DBs
NCBI-GeneID:
123898603
NCBI-ProteinID:
XP_045805555
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All DBs
Position
LG7:30710027..30712246
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AA seq
696 aa
AA seq
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MGTERKRKLSLFDDSAAATAKMVKTNGNNLINHWNGKPYSARYYDIFDKRKTLPVWQQKD
DFLQVFKDNQTLILVGETGSGKTTQIPQFVLEAVDLETPDKRGKKMMIACTQPRRMAAMS
VSRRVAEEMDVTIGEQVGYSVRFEDCSSARTVLKYLTDGMLLREAMTDPLLERYKVIILD
EAHERTLATDVLLGLLKEVLKKRPDLKLVVMSATIDAEKFQGYFVGAPLMKVPGRLHPVE
IFYTEEPERDYFEAAVRTVVQIHMCEPAGDILVFLTGEEEIEDACCKILKEVANLGDQVG
PVKVVPLYSTLPPAMQQRIFEPAPPPVKDGGPTGRKIVVSTNIAETSLTIDGIVYVIDPG
FAKQKVYNPRVCGESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTERSFNNDLKPQTDP
EILRTNLANIVLTLKKLGIDDIVHFDFMDPPAVETLSRALELLNYLGALDDECNLTNLGE
IMSEFPLDPQMSKMLVVSPEFNCSNEILSISAMLSVPNCFIRPRQALKAADEAKARFGHI
DGDHLTLLNVYHAYKQNNEDASWCYNNFINNRALKLADNVRQQLVRIMARFNLKLCSTNF
NSRAYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVIYNENI
LTSQNYNIRTVTDIRGEWLVDIAPRRWRENVLTLLL
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgggtacagaaaggaagagaaaattgagtttattcgacgactctgctgctgctactgct
aagatggtgaaaaccaacggcaacaatctcattaatcactggaacggtaaaccttactct
gcaaggtactatgatattttcgataagaggaaaacccttcccgtttggcaacagaaagat
gatttcttgcaagttttcaaggataatcagactttgattctcgttggtgaaactggtagt
ggtaaaaccactcaaattcctcaatttgttttagaagctgttgatttagagacaccagat
aagcgcggcaagaagatgatgatcgcatgcactcagcctcgtagaatggctgcaatgtct
gtttcacgccgtgttgctgaagagatggatgtcactattggagaacaagttggttatagc
gtccgttttgaagattgtagtagtgcaaggacagttttgaagtatttaactgatggtatg
cttttgagagaagcaatgacagatccacttttagagcgatacaaagtaattattctagat
gaagcacacgaaaggactttggcaactgatgtgctacttggtcttcttaaggaagttctt
aaaaaaagacctgacttgaagttggtggttatgagtgcaacgattgacgctgagaagttt
cagggatattttgttggtgcccctcttatgaaagtacctggaaggttacatccggtggaa
attttttatactgaggaaccagaaagggattactttgaggctgctgttaggacagtggtg
cagattcatatgtgtgaacctgctggagacatacttgtttttcttactggagaggaggag
atagaagatgcatgctgcaaaatattgaaagaagttgcaaatttgggggatcaggtgggc
cctgtgaaagtagtgccattgtattctactcttcctccagctatgcagcagaggatattt
gagccagctccgcctccagttaaggacggaggccccactggaaggaagattgtggtatct
acaaacatagcagaaacttcgttgacaattgatggtatagtttatgttattgaccctgga
tttgctaagcagaaggtttataaccctcgagtttgtggtgagtctttgttggtgtctccg
atatcaaaggctagtgcacaccagagatctggacgtgctggaagaactcaaccagggaaa
tgctttagactttatactgaaagaagtttcaataatgaccttaagccgcagactgatcct
gaaattttgagaactaatcttgccaacatagttcttacattgaagaaactgggtatagat
gatatagtgcattttgacttcatggaccctcctgccgttgaaactttaagccgtgctttg
gaactgttgaattacttgggtgcactggatgatgaatgtaacttaacaaatctgggtgag
attatgagtgagtttccgttggaccctcagatgtcaaagatgcttgttgttagtccagaa
ttcaactgttcaaacgagattctttcaatttctgccatgctatcagtacccaattgcttt
atccggcctaggcaggcactaaaagctgcggatgaagcgaaggctaggtttggacatatt
gatggagatcatctcaccctcttgaatgtataccatgcctacaagcaaaacaatgaggat
gcttcttggtgctacaacaacttcattaataatagggcactcaaattagctgataatgtt
cgacaacagcttgttcgtatcatggctcggtttaacttgaagttatgcagcacaaacttc
aatagtcgcgcctactacgtcaacataagaaaggcaatgctagcaggatatttcatgcag
gtggctcatcttgagcggacaggacactacttgacagtgaaagacaaccaggtggtacac
ttgcatccatcaaattgtctggatcacaagcctgagtgggttatctataatgaaaatatt
cttaccagtcaaaattataatatacgtactgtgacagatatacgcggtgaatggttagtt
gatatagcaccacggagatggagagaaaatgttttaacactactattatga
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