Trifolium pratense (red clover): 123898984
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Entry
123898984 CDS
T08949
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-A isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123898984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpra03032
]
123898984
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123898984
DNA replication proteins [BR:
tpra03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
123898984
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
123898984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
LIG3_BRCT
ECT2_BRCT0
TopBP1_BRCT0
Motif
Other DBs
NCBI-GeneID:
123898984
NCBI-ProteinID:
XP_045805996
LinkDB
All DBs
Position
LG1:35232987..35246477
Genome browser
AA seq
977 aa
AA seq
DB search
MSKTKSFQGVNVFMSRNLVPPEVFDTLHDAVKHNGAQIQLCCDPSRNGPNDYHIISCSKH
EKFQDLKSKGCKMLGPRCVLLCAKERKPLPKQGFTCCFAMDGVKILASGFDADEKVKIEE
LVTEMGGALHTKPSSDLNFVIVKNVLALKYKWALNVLKKPIVTYEWLKQCSDEHRVVPQE
SYKVLPFSGLKICVTGISADKRKEMEKLILQNGGKYSAELTKNCTHLICDAPEGDKYKVA
KRWGHIHIVTIKWFDQSIARRACLNEESYPVQSGSLSSRKVTRHLTVQHSQEKDIGKMQS
GSFARAADSNMLVSNCAESMDIDSEATQSQHTSFVSNVSLFVKEADAEAPPLQTSNGLNF
DGAVANDSESDDNDLYLAECRISLVGFEASEMRKLVNLVRKGGGSRYMSLNDKLTHIVIG
NPTEMEKKDVRSIAALGVVYVVKTSWLEDCDRQKKQVPVLRRHIACDLVLPKANIVKGVV
SGIVPMDQSKSSSFRQSFQTDQGVGIKDFGVTMPESLEKNKQEKHNMGMNVVTFGKASGR
TMSQTQVPDKKLRLQKITQHGSNVHVKSTNVFKGKTFCFSNLLPEERRGEIVQWIHQGGG
EIISGQTKQSIHYTIECHGVKPSIGDYGSTYISSHWIRSCLEDGSLLDVDSHILYSPLPC
RVPLPGFESLRFCVSQYDEKDRILLWNLCNVLGAKFVDKLTKKVTHLLCKFANGPKYEAS
CKWGIRTVTSEWIFECVKQNGVIAIDQFLPKEVTTQDREAGVCTVSQFPTQAVRMINDMP
SQFPSQSRSLRNTENQNVDSGVDNHGTRSKISSVNSKKARLMEEPGLYNKVPSTVNPGIH
VSDLNLSKDNMLKDALEATHAVPDVAAAIEDLLEQTSKVHDQRSPGNTGCERSIYPSDCS
VVREDNPNPHTVFGLSKHWLNRNGRNDNDNSETPQDRRPGMYDAFSETQTESQVVSYEED
LSGRQMLIGVLTRSSMQ
NT seq
2934 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagacaaagtcatttcaaggcgtaaacgtcttcatgtcgcgaaacctagttccg
ccggaagtcttcgatacgcttcacgacgccgttaaacataacggcgctcaaattcaactt
tgttgtgatccttcccgtaatggtcccaacgattatcatatcatttcctgcagcaaacac
gagaaatttcaagatcttaaatcaaagggatgtaaaatgctcggtcctagatgtgttctt
ttgtgtgctaaagaacgaaagcctctgcctaaacaaggcttcacttgttgctttgctatg
gatggtgtcaaaatacttgcctctggttttgatgcggatgagaaggttaagatagaagaa
ttagtgactgaaatggggggagctctgcatactaaaccgtcgtcagatttgaactttgtc
atcgtgaaaaatgttttggctctaaagtacaagtgggctttgaatgtcctgaagaaacca
attgttacttatgaatggttaaagcaatgctcagatgagcatcgcgttgttcctcaagag
tcatataaggttcttcctttctctgggttaaagatctgtgtgactggaatctcagcagat
aagcgcaaagaaatggaaaagcttattttacaaaatggtggaaaatactctgcggaactg
acaaagaactgcacacatttgatttgtgatgctcctgaaggtgataagtataaggtggcg
aaacgttggggccacattcatattgtaacaataaaatggtttgatcaatctattgctcga
agagcatgtctgaatgaggagtcctaccctgttcagagtggatctttatcttcacgtaag
gtgaccagacacttaacagtgcaacatagccaggaaaaggatatcgggaaaatgcagtct
ggctcattcgcaagagctgcagattcaaatatgctagtttctaattgcgccgagtctatg
gatatagattcagaagctacacagtcacaacatacatcgtttgtttcaaatgtttcatta
tttgttaaagaggcagatgctgaagcacctccattacagaccagcaatggattgaatttt
gatggtgctgttgccaatgattcggaatctgatgacaatgacctgtatttagcagagtgc
agaatatcacttgttggttttgaagcttctgaaatgcggaagctagttaatttggtgcgt
aaaggcggaggctctcgatacatgtctttgaatgataagttgacacatatagtaattggg
aatcctacagaaatggaaaagaaggatgtaaggagtattgctgctctaggtgtcgtttat
gttgttaaaacctcatggcttgaagattgtgaccgtcaaaagaaacaagtccctgttctt
cgacgacacattgcatgtgatcttgttcttccaaaagctaacatagtaaaaggagtggtt
agtggcattgtgcctatggatcaaagtaaaagctcaagctttcgccaaagcttccagact
gatcagggggtgggtattaaggactttggagttacaatgccagaatctttggagaaaaac
aaacaagagaaacacaatatgggtatgaatgttgtcacatttggtaaagcatcgggtaga
actatgtcgcaaactcaagttcctgataaaaagttgaggttacaaaagattacgcaacat
ggctccaatgtgcatgtgaagtcaacaaatgttttcaaagggaaaacattttgtttctca
aatttacttcctgaagaaaggagaggtgagattgttcaatggatacaccaagggggagga
gagataataagtgggcaaacaaaacagagtatccactatactattgaatgccatggtgta
aaaccttcgataggtgattatggaagtacctatatttccagtcactggatacgatcttgt
ttggaggatggatcattgctggatgttgatagtcatattctttattctccacttccctgc
cgcgttcctttgcctggttttgaaagcctccggttttgtgtttcacaatatgacgagaaa
gacagaattctactttggaacttgtgtaacgttctaggagctaaatttgtggataaactg
actaagaaggtgacccatttattgtgtaaattcgccaatggacccaagtacgaggcttct
tgtaagtgggggatacgaacagttacatccgagtggatatttgaatgtgtcaaacagaat
ggagttattgccatagatcaatttttgcccaaagaagtcaccactcaagaccgagaggca
ggagtttgcacagtgagtcaatttcctacccaggctgttcgaatgataaatgacatgccg
tcccagtttccaagtcaatcacgaagtttgagaaacacggaaaatcaaaatgtagatagt
ggagttgacaatcatgggactcgttctaaaatatcaagcgttaatagtaaaaaggcaagg
ctcatggaagaacctggcctgtataataaggtaccttctacagtaaatccaggtattcat
gtctctgacttgaatttgtctaaagacaatatgctcaaagatgctctggaggcaacccat
gctgttcctgatgttgctgctgcaattgaggacttgttagagcagacaagcaaggtgcat
gatcagaggtccccagggaatacagggtgtgagagaagtatttacccatctgattgttca
gtcgttcgtgaagacaatccaaatcctcatactgtcttcggattatcgaagcactggctg
aatagaaacggaagaaatgataatgataatagtgagactcctcaagaccgaagaccagga
atgtatgatgcttttagtgaaacacaaacagaatctcaggttgttagttatgaagaagac
ttgtctggaaggcaaatgcttataggagttctaactcgaagtagcatgcagtga
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