Trifolium pratense (red clover): 123899136
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Entry
123899136 CDS
T08949
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
123899136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123899136
03009 Ribosome biogenesis [BR:
tpra03009
]
123899136
04131 Membrane trafficking [BR:
tpra04131
]
123899136
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tpra04147
]
123899136
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
123899136
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
123899136
Membrane trafficking [BR:
tpra04131
]
SNARE
SNARE associated proteins
Others
123899136
Autophagy
Aggrephagy
Other aggrephagy associated proteins
123899136
Exosome [BR:
tpra04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
123899136
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
CDC48_2
AAA_33
AAA_14
AAA_22
AAA_5
TIP49
NPHP3_N
AAA_17
RNA_helicase
nSTAND3
AAA_28
Mg_chelatase
Parvo_NS1
AAA_18
ABC_tran
ATPase_2
Viral_helicase1
IstB_IS21
AAA_7
Vps4_C
NACHT
NB-ARC
TsaE
Zeta_toxin
Sigma54_activat
AAA_24
DUF815
AAA_lid_PRS2_C
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
123899136
NCBI-ProteinID:
XP_045806154
LinkDB
All DBs
Position
LG7:complement(52943084..52946719)
Genome browser
AA seq
802 aa
AA seq
DB search
MSEPESVKKDFSTAILERKKSPNRLVVDEALNDDNSVVVMHPQTMEKLGLFRGDTLLIKG
KKRKDTICIAVGEDSCEEARIRMNKVVRSNLRVRLGDVVSVHQCSDVKYGIRVHILPIDD
TIQGITGNLFDAFLKPYFLEAYRPVRKGDLFIVRGGMRSVEFKVIETDPGEYCVVAPDTE
IFCEGEPVKREDEDRLDEIGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGIL
LYGPPGSGKTLIARAVANETGAFFICINGPEIMSKMAGESESNLRKAFQEAEKNAPSIIF
MDEIDSIAPKRDKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGR
FDREIDIGVPDEIGRLEVVRIHTKNMKLSDDVDLERISKDTHGYVGADLAALCTEAALQC
IREKMDLIDLEDETIDAEILNSMAVTNEHFHTALGTSNPSALRETVVEVPNVSWEDVGGL
ENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISV
KGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGSNGDAGGAADRVLN
QLLTEMDGMSAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRHSIFKSCLR
KSPVAKDVDLRALAKYTQGFSGADITEICQRACKYAIREDIDKDIEQQRKRKENPEAMDE
DFVNDEVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFRSEFKFADSGNRT
TGSDPFATTTATAGADEDDLYS
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacctgaatcagtgaagaaggacttttccaccgcgattctggaacgcaagaag
tcaccaaacaggcttgttgtggatgaagcgcttaacgatgacaactctgttgttgtgatg
cacccacaaactatggaaaagttggggcttttcagaggtgacaccttactcatcaaggga
aagaaaaggaaggatactatttgtatagcagttggtgaggatagctgtgaggaggctagg
attaggatgaacaaagttgtgaggtcgaatttgagggttcgacttggagatgttgtgtct
gtgcaccagtgttctgacgtcaagtatgggatacgtgtccacattcttcctattgatgat
accattcagggtatcactggcaatctctttgacgctttcttgaaaccctatttcttggag
gcttatcgtcccgtcagaaagggagatctatttattgtgcggggagggatgagaagtgtt
gagtttaaggtgattgaaactgatcctggggagtattgtgtggttgctccagacaccgag
atcttctgcgaaggggaacctgtgaaaagagaggatgaagacaggcttgacgaaatcggt
tatgatgatgtgggtggtgttaggaagcaaatggcacagattcgtgaattggttgagctt
ccattaaggcatccacaacttttcaagtcgatcggtgtgaaaccacctaaaggaattttg
ctatatggacccccgggttctggaaagaccttaatagcaagagctgttgctaatgaaacc
ggagccttctttatttgtattaatggtccggagattatgtccaaaatggctggagagagt
gaaagcaatcttcggaaagcatttcaggaagccgaaaagaatgcaccgtccatcatcttt
atggatgaaattgattctattgcacccaagcgggacaagacaaacggtgaagtcgaaaga
aggatagtttcacaacttttaactctaatggatggattaaaatctcgtgctcatgttatt
gttatgggcgccactaatcgtccaaatagcattgacccagcattgagaaggtttggtaga
tttgacagagaaatcgatataggtgttccagatgagatcgggcgacttgaagtcgttcgc
atacataccaaaaacatgaagctctctgatgatgttgatttggagagaatttcgaaagat
actcatgggtatgttggtgccgaccttgctgccctttgcaccgaagctgctttgcaatgc
attagagagaagatggacctcattgacttagaggatgagaccattgatgctgagatactg
aattccatggcagttacaaatgagcatttccatactgcacttggaacaagcaacccatca
gctttacgtgaaactgttgttgaggtgcctaatgtcagctgggaggacgtcggaggcctt
gagaatgtcaagcgtgaactgcaagagactgttcaatatcctgttgagcacccggaaaag
tttgagaagtttgggatgtcaccatcaaaaggagttctcttctatggtcctccgggatgt
ggaaaaactttgttagccaaagcaattgccaatgaatgtcaagctaacttcatcagtgtg
aaaggaccagaattgcttacaatgtggtttggtgaaagtgaagccaatgttagggaaatt
tttgacaaggctagacaatcggctccatgtgtcctcttttttgatgagcttgactccatt
gccactcagagagggggcagcaatggggatgctggtggtgctgccgacagagttctaaat
caacttttgacagagatggatggcatgtctgccaaaaagaccgtattcattattggagcc
actaacagacctgacatcattgattcagcacttctccggccaggccgtctagatcagttg
atctatattcctcttcctgatgaggattcccgtcattcgatcttcaagtcctgcttgagg
aagtcaccggtcgcaaaagatgttgatttgagagcattggctaagtatactcaaggtttt
agtggtgccgacattacagaaatatgccagcgagcatgcaaatatgctataagagaagac
atcgataaggacatagagcaacagaggaagaggaaggaaaaccccgaggcaatggatgaa
gactttgttaacgatgaagttgcagagattaaggcggctcattttgaagagtcaatgaag
tatgcacgtaggagtgtcagtgacgctgatatacgtaaataccaggcatttgctcagacg
ttgcaacaatctaggggattcagaagtgagtttaagtttgcagattccggaaataggact
accggatccgacccttttgcaacaactactgccactgctggggccgatgaagatgatctt
tatagttag
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