Trifolium pratense (red clover): 123899436
Help
Entry
123899436 CDS
T08949
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123899436
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123899436
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
123899436
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
123899436
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
123899436
NCBI-ProteinID:
XP_045806513
LinkDB
All DBs
Position
LG7:53227389..53233333
Genome browser
AA seq
668 aa
AA seq
DB search
MSGLLNSSLNGSTSNLPDGAGRSFTTSFSSQSGAASPIYQHTGGIQGLHNMHGSFNIPNM
PSTLTSRNSTINSMPTGAVQQPASSLSSGRFTSNNLPGALSQLSHGSSHGQSGVNSRGGI
SVVGNPGFSSSSNGVAGSIPGILPTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMVA
GGNIGRISSGGLSIPGLASRLNLNGNSGSVGLGMQGQNRLMSGVLPQDLIFDSGSPQVIS
MLGNSYPSAGGPLSQSHMQAVHHLNSMGMLNDLNSSDSSPFDPNDFPSLSSRPSSAGGPQ
GQLGSLRKQGLSPIVQQNQEFSIQNEDFPALPGFKGGNGDFTMDMHQKEQLHDNAMSMMQ
SQHFSMGRSAGFNLGGSYSSHRAQQQQQQHAPSVSNSGVSFSSVNNQDLHLHGSDIFPSS
NSTYHSQTSGPPGIGLRPLNSPNTVSGTGSYDQLIQQYQQHQNQSQFRLQQMSAVNQSFR
DHGMKSMQTAQSAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFG
SPWSEEPAKGDPEFSVLQCYYAKPPPALHKGYFSKFNLETLFYIFYSMPKDEAQLYAADE
LYEQKWFYHKEHRMWYIRVPNVEPLVKTPTYERGSYHCFDPNTFETVRRDNFVLHYEHVE
KRPSLPQH
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcttacttaattcttctctgaacggatctacttcaaatcttccagacggtgct
gggcggtcttttactacatcattttctagtcagtctggtgcagcctccccaatttatcag
cacactggtggtattcaaggattgcacaacatgcacgggagctttaacattcccaacatg
cccagtactcttacatcaagaaactcaacaataaatagcatgccaactggagcggttcaa
caacctgcgtcaagcctttctagtggaagatttacatcaaataatctacctggtgctctg
tcacagctatctcatggaagctctcacggacaatctggagtcaacagtagaggaggtata
agtgttgtaggaaatcctggttttagcagtagctcaaatggagttgctggttctattcct
gggattcttccaacttctgctgcaattggtaaccgtaatgctgttccaggattgggagta
tccccaattttgggaaatgcaggtcctcggataacaagttcgatgggaaacatggttgct
ggaggtaacattgggaggataagctctggaggattgtccattccgggtcttgcttcacgt
ctcaatttaaatggaaacagcggatctgttggtttaggcatgcaaggacaaaatcgattg
atgagcggtgtgcttccacaagacctcatttttgattcaggatctccccaggtaatttca
atgctaggaaattcttatcccagtgctggaggtccactttcacaaagtcatatgcaagca
gtacatcacttgaactctatggggatgttgaatgatttaaattccagtgacagttcaccc
ttcgaccctaatgacttcccttcactatcaagtcgtcctagttctgctgggggccctcaa
ggacagttgggctctttacgaaaacagggtcttagtcctattgtacaacaaaaccaagag
tttagcattcaaaatgaagacttcccagctttaccaggattcaaaggtggtaatggagat
tttactatggatatgcaccagaaagaacaacttcatgacaatgctatgtcaatgatgcaa
tcacagcatttctcaatggggaggtcagccggtttcaatttgggaggatcttattcatca
caccgagctcagcaacaacagcagcagcatgctccatctgtcagtaacagtggtgtctct
ttttcatctgtgaacaatcaagatcttcatctgcatgggtcagatatttttccgtcttca
aactctacgtatcattcacagaccagcggacctcctgggattggattaaggcctctaaat
tctccaaatactgtttctggtacgggttcatatgaccagctcatccagcagtatcaacaa
caccagaaccagtcccaatttcgccttcagcaaatgtcagctgtaaatcagtcctttagg
gatcatggcatgaagtctatgcaaactgcacaatctgctcctgatccatttggtttgctt
ggcttgttaagtgtaatcaggatgagtgatcctgatctgacatctcttgctcttggaatc
gatcttacaacacttgggttgaatttgaattcttcagaaaatcttcacaagacttttggg
tctccttggtctgaggaaccagctaaaggtgatccagagtttagtgtgcttcaatgttat
tatgctaaaccacctcctgccttacataaaggatatttttcgaagtttaatttggaaacg
ttgttttacatattttacagcatgcccaaagatgaagcacagctatatgccgcagatgaa
ctgtacgaacaaaagtggttttatcacaaagagcatcgcatgtggtacataagagttccc
aacgtggagccgcttgtcaaaacacccacatacgagagaggatcttatcattgttttgat
ccaaacacttttgaaacagtccggagggataattttgttcttcattatgaacatgtggaa
aagagaccatctttgccacaacattga
DBGET
integrated database retrieval system
