Trifolium pratense (red clover): 123899658
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Entry
123899658 CDS
T08949
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 2
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123899658
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123899658
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
123899658
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Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
123899658
NCBI-ProteinID:
XP_045806808
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Position
LG1:6193261..6197943
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AA seq
200 aa
AA seq
DB search
MIPSQVVNTYPLSSYTFGTKEPKMEKDTSVADRLARMKVNYMKEGMRTSVEGILLVQEHN
HPHILLLQIGNTFCKLPGGRLKPGENEIDGLKRKLTSKLGANSPALVPDWQIGECVAIWW
RPNFETIMYPYCPPHITKPKECKKLFLVHLSEREYFAVPKNLKLLAVPLFELYDNVQRYG
PVISTIPQQLSRFQFKMITN
NT seq
603 nt
NT seq
+upstream
nt +downstream
nt
atgataccgtctcaggttgtaaacacatatccattgtcaagctacaccttcggcaccaag
gagccaaagatggagaaagatacctccgtcgccgatcgtctcgctcgtatgaaagtaaat
tatatgaaagaaggaatgaggactagcgtggaaggaattttactggttcaagaacacaat
catcctcatattcttcttctgcaaattgggaacacattttgcaaactcccaggtggtcgt
ctcaagccaggggagaatgaaattgacggcttgaagagaaaattgaccagcaagcttggc
gctaattcacctgctcttgtacctgactggcagatcggtgaatgtgttgcaatctggtgg
aggccaaattttgaaaccataatgtatccatactgtcctcctcatataaccaaacccaag
gaatgcaagaagcttttccttgtccacttatctgagagggaatactttgccgtacccaaa
aacttgaagctgcttgctgttccattgtttgaactctatgacaatgttcagagatatgga
ccagtcatatcgaccattcctcagcaactttccagattccagtttaaaatgatcactaac
tga
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