Trifolium pratense (red clover): 123899797
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Entry
123899797 CDS
T08949
Name
(RefSeq) formamidopyrimidine-DNA glycosylase isoform X1
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
123899797
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123899797
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
123899797
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
123899797
DNA repair and recombination proteins [BR:
tpra03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
123899797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-GeneID:
123899797
NCBI-ProteinID:
XP_045806974
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All DBs
Position
LG7:complement(57872279..57877862)
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AA seq
401 aa
AA seq
DB search
MPELPEVEAARKAVEDNCIGKKITKCIVADDSKVIDGVSHSDFEASVVGKTIVAARRKGK
NMWLQLDSPPFPSFQFGMAGAIYIKGVAVTKYKRSAVNDEDEWPSKYSKFFIQLDDGLEL
SFTDKRRFARVRLLKDPTLVPPISELGPDALFEPMTLDVFTERLHKKKTEIKALLLDQSY
ISGIGNWVADEVLYQARIHPRQIASSLSAENCSTLHKSIKEVIEKAVEVGADSSQYPTNW
IFHSREKKPGKAFVDGKKIDFITAGGRTTAYVPELQKLSGTQVLKETGKPRGKTSKKTSV
DDDNNDDIENPTKNEDENLGSLKSKKETGKAGAKGKKPSKRKKTEESDNDNDNDDGDAGA
DNDDSDQVEKKKPGKQTKGEKQPKKSVQGSQNSRSTRSKAK
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgccggagctaccggaggtagaggcggcgagaaaggcggtggaagacaactgcatcgga
aagaagataaccaaatgcatcgttgccgatgattccaaagtcatcgacggtgtctctcac
tccgacttcgaagcttccgtcgtcggcaaaaccatcgtcgctgctcgccggaaaggaaag
aatatgtggcttcagctcgattctcctccttttccttctttccaatttggtatggctggt
gctatatacataaagggcgttgcagtgacgaagtataaaaggtctgctgtaaatgatgag
gatgaatggccttccaaatattcaaagttttttattcagctagatgatggtttggagctg
tccttcactgacaaaaggcggtttgctagagttcgcctgctcaaagatccgacattggtt
cctcccatatctgagcttggtcctgatgcactttttgaacccatgacacttgacgtgttt
actgagcgtttgcacaagaagaaaactgaaatcaaggctttattactagaccaaagctat
atttcaggtattggaaattgggttgcagatgaagtgctgtatcaagcaaggattcatcct
cggcagatagcttctagcctgtcagcagagaactgctcaactttgcacaagtccattaaa
gaggttattgaaaaagcagttgaggttggagcagatagtagtcaatatcccactaattgg
atatttcattctcgtgaaaagaagcccggcaaagcttttgttgatgggaaaaaaattgac
ttcatcacagcaggtggcaggacaactgcttacgtgccagagttgcaaaagctaagtgga
acacaagtgttaaaagaaaccggtaaacctagagggaaaacctcaaagaaaacaagtgta
gatgatgataacaatgatgacattgagaatcctacaaagaacgaagacgagaatttggga
agtctcaaatcaaagaaggaaacgggaaaggctggagctaaaggtaagaaaccttccaaa
agaaagaagactgaggaaagtgacaatgacaatgacaatgatgatggggatgctggtgct
gataatgatgacagtgatcaagttgaaaagaagaaaccaggcaaacaaactaagggagag
aagcaaccaaagaaaagtgttcaaggcagtcaaaatagtaggagtactaggagtaaagcc
aagtag
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