Trifolium pratense (red clover): 123899994
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Entry
123899994 CDS
T08949
Name
(RefSeq) exosome complex component RRP4 homolog
KO
K03679
exosome complex component RRP4
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
123899994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123899994
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
123899994
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
123899994
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRP4_S1
KH_6
ECR1_N
RRP40_S1
DUF3909
Motif
Other DBs
NCBI-GeneID:
123899994
NCBI-ProteinID:
XP_045807230
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All DBs
Position
LG7:complement(52354965..52358977)
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AA seq
327 aa
AA seq
DB search
MREIQLQLNQTQKLRLQKVLETLESQSSIPNSDSSVTISDSISVNHEDGVLKGHGTTDHN
GEVVATLCGIVERVNKLVYVRTLRSRYKPEDGDIVIGRVVEVAQKCWRLDINCSQNAYLM
LSAMNMPDGVQRRRTAVDELNMRRIFEEGDVICAEVRRSQHDDIHLQARSQKYGKLNAGQ
LLTVAPYLVKRQKQHFHHLEKFDVDLILGCNGFVWVGEHVEARDVMVEDPVNLSDPQVLI
PNENSVSLEEQDKNYTALETRNYICRAANAVRVLSTLGFTITLESIKEVIDLSISANLDI
HDMFGSEFCVLVAEKEAERRSSSKRKR
NT seq
984 nt
NT seq
+upstream
nt +downstream
nt
atgagagaaattcagttacaactcaatcaaactcagaagctccgtctccagaaagttcta
gaaactctagaatctcaatcttcaattccaaattccgattcttcagtcaccatatccgat
tccatctccgtcaaccacgaagacggcgtactcaagggacacggaaccaccgatcataac
ggtgaagtcgttgccactctgtgtggtattgttgagcgtgttaacaaactcgtttatgtt
cgcactttacgctcaaggtataaacctgaggatggtgatattgttatagggcgtgtagtt
gaggttgctcaaaaatgttggagattggatattaattgcagccaaaatgcttatctgatg
ctttctgctatgaatatgccggacggtgtacagaggcgaaggacagccgtggatgagtta
aacatgcgccgtatctttgaggagggagatgtcatttgtgctgaagttcgacgttctcag
catgatgacatacaccttcaagcaagaagtcaaaaatatggaaagcttaatgctggtcaa
ctgcttacagtcgcaccgtatttagtgaagagacagaaacagcatttccatcatctggag
aagtttgatgttgatttaatacttggttgtaatggattcgtatgggtcggggaacacgtt
gaagccagagatgtcatggtagaagatccagtgaacctatctgatccacaagtgttaatt
ccaaatgaaaattctgtcagtcttgaagaacaagataaaaactatacggcactggagaca
agaaattacatatgcagagctgctaatgctgttagagtattatccactttaggattcact
ataacattggaaagcatcaaggaagttattgatctaagcatttctgcaaatcttgatata
cacgacatgtttggttctgagttttgtgttctggttgccgaaaaagaggcagaaaggaga
agctcaagtaaaaggaagcggtag
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