Trifolium pratense (red clover): 123900124
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Entry
123900124 CDS
T08949
Name
(RefSeq) protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1
KO
K11661
helicase SRCAP/SWR1 [EC:5.6.2.-]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
123900124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tpra03036
]
123900124
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Chromatin remodeling factors
SRCAP complex
123900124
SWR1 complex
123900124
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
HSA
ResIII
DEAD
Myb_DNA-bind_6
Myb_DNA-binding
DBINO
Motif
Other DBs
NCBI-GeneID:
123900124
NCBI-ProteinID:
XP_045807405
LinkDB
All DBs
Position
LG7:22485642..22505378
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AA seq
2048 aa
AA seq
DB search
MASKGPRSKVDPEYKAKRQKAVEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQA
KKVSLKASKGMLDQATRGEKKMKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELD
EKKKKALDKQLEFLLGQTERYSTMLAENLVDAHTPAEKISAEHHMSIQCKDIDGDIINEP
KEANVAEYQSDAPDHDEEYDVQSDDVSDDDEQTLEEDEALITKEERQEELAALQNEMDLP
IEELLKRYAGDKGESAKHESSPECSEDGGNVVRTGDAVDQEELLSENGDHISIRKIGTND
SSMVPGRRCDDSNGDAATPTNNQSQNGDHQSENLKEVPTETAKENVPFDFSDEEEDGDFL
SGTEDKDDETTLSEEEKLDRVDAIDPKDEIALLQKESDMPVEELLARYKKDLSDDEDQED
ESDYASASSEDHQNSSVHDDAEQKDPAVSVDEDMKSGEQLATIQTQAEEQGEAPCENSEE
RESEDIIADAAAAARSAQPTGNTFSTTKVRTKSPFLLKYTLREYQHIGLDWLVTMYEKKL
NGILADEMGLGKTIMTIALLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILT
YFGSAKERKHKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQ
RWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEG
EEKVNKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKVEHVIYCRLSKRQRNLYEDFIASSE
TQATLANANFFGMIGVIMQLRKVCNHPDLFEGRPIVSSFDMCRIDIQLSSSICSMLLPSS
FSTVDLEGLGLLFTHLDYGMTSWESDEVQAIETPATLIMERTDMADLEVIKPGLKCQKKP
HGTNIFEEIQRAIWEERIREAKERAEAIAWWNSLRCKKRPIYSTTLRDFVTIRHPVYDIH
QKKANPVSYLFPSKLADIVLSPVERFQRMIDVVESFMFAIPAARASPPVCWCSKSETTVF
LKPSYKQRCSDILSPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELAILLRKLKSEGHR
ALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKFFLFILSTRSG
GVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKAK
QKRALDDLVIQSGGYNTEFFKKLDPMELFSGHQTLSIKDTQKEKNQNSGEVSVTNADVEA
ALKHVEDEADYMALKKVELEEAVDNQEFTEEASGRLEEDEYVNEDDDPQELGDSVSTLSK
ENTLMLNGADLMEDKPPSIVAKEDDVDMLEDVKQMAEAAAAAGQALSAFENELRPIDRYA
IRFLEMWDPIIDKAALESEVRIEDTEWELDRIERYKEEMEAEIDEDEEPLVYESWDADFA
TTAYRQQVEALAQHQLMEELEYEAKLKEEAEEEKNRTPAPSVSKPKPKKKPKKAKFKSLK
KGSLTTGLRTVKDELRAVPMAIDDDVATSLDFVSPSSSTHKKRKKSKLTTDGEEEKRFKK
SKKYKRDPHDIYDSDLDSNSLDMQQDDHAESDPCKSLVVLEPKTVGRSKMGGKISITPMP
VKRVFMIKSEKLKKGNIWYKDCIPSADFWLPQEDAVLCAVVHEYGPNWSFVSEILHNMTA
GGAYRGIYRHPVHCCERFRELFQKYVLFSMDNANHEKINNTCSGKALKVTEDNIRMLLDV
ASEQANRELLLQKHFFALLSTVWKAAHVDRRQNLHATCNGLYFDQSFFSSIGQHSQNPLN
KPSERMTFANSAQSKMLLAAALDDFGSRPENDKIVLSNQGKDMLVTEDQVDITLEFPKEE
SDSLSSFPSVIKLSIKGDEAPPSLNKHTRSHHLKHCSAAAENRFREVAKACEEDSSRWAS
SAFPTNDARSRPGSRVQSSGKQRSSISDVIKPSRSKTKRPSVDSSELHRHQTGPLFPPMP
SLQEPTLDLPSSTVDNFGFDMESDFPFDLNGESSLEREDFGLVPHDYIAELISGLDDCTT
FPEYTDIR
NT seq
6147 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctaaaggtccaaggtctaaggttgatcctgagtataaagctaaacggcaaaag
gctgttgaagctccacgggagcctagacgacccaaaactcattgggaccatgtcttagaa
gagatggtgtggctatcaaaggactttgagtcagagaggaaatggaaattagctcaggcg
aagaaagtttctttaaaagccagcaaaggcatgttagatcaggctacaagaggtgaaaag
aagatgaaggaagaagagcagcggttaagaaaagttgcactaaatatttccaaggatgtt
aagaaattttggacaaaaatagaaaagctggttctttacaagcatcaaatggaactcgac
gagaagaagaaaaaggcactggacaaacagcttgagtttcttttaggtcaaactgagaga
tattcaactatgttggccgagaatcttgtggatgctcatacaccagcagagaaaatttct
gcagagcatcacatgagtattcaatgcaaagatatagacggagatattatcaatgaacct
aaggaagccaatgttgcagagtatcaatccgatgcacctgatcacgatgaagaatatgat
gtacaatctgatgatgtatcggatgatgacgagcaaaccctcgaggaggatgaggctctt
ataactaaagaagaaaggcaagaggaattggcagctttgcaaaatgaaatggatcttcca
attgaggagttactcaaacgttatgctggagataaaggagaatcggcaaagcatgaaagt
agtccagagtgtagtgaagatggtggaaatgtagttagaactggtgatgctgttgatcag
gaagaactattatcagaaaatggagatcatatatctatcagaaaaataggtacaaacgac
tccagcatggtccctggtcgacgttgtgatgacagtaacggtgatgcagctacaccaaca
aacaatcaatctcaaaatggcgaccatcaatctgaaaatcttaaagaggttcctactgag
acggccaaagaaaatgttccatttgatttttctgacgaagaggaagacggtgactttttg
tctggcacagaggataaggatgatgaaacaaccttatctgaggaagaaaaactggacaga
gttgatgcaattgatccaaaggatgagattgcattactacaaaaagagagtgacatgccg
gttgaggaactgcttgcaaggtataaaaaggacctgagtgatgatgaggatcaggaagat
gagtcagattatgcttctgcttcatcagaagaccatcagaactcatcagtccatgatgat
gctgagcagaaggatccggctgtttctgtggatgaagatatgaagtccggtgagcaactg
gctaccatacagacgcaggcagaagaacagggggaagcaccatgtgaaaattcagaggaa
agagaaagtgaggatataattgctgatgcagctgctgctgcaagatcagcacaaccaact
ggaaacaccttctccacaactaaagtgcgtacaaaatccccctttctactcaagtacact
cttcgtgaatatcaacatattggattggattggctcgtcacaatgtatgaaaaaaagctg
aatggaattttggcggatgaaatggggcttggaaaaactattatgactatagctttgctt
gcacatcttgcctgtgaaaagggaatttggggtccacatctaattgtggtcccaactagt
gtgatgcttaactgggagactgaatttctgaaatggtgtcctgcgtttaaaattttgaca
tattttggaagcgcaaaggagcgaaaacataaaagacaaggatggttaaaaccaaactca
tttcatgtatgcataacaacttatagattggttattcaggattccaaagttttcaagcgc
aaaaagtggaaatacttgatcttagatgaggcacacctcattaaaaactggaaatcacaa
aggtggcagacactgctgaatttcaattctaaacgacggattctgttgactggtacaccg
ctacagaatgatctcatggaactatggtctctcatgcatttcttgatgccccatgttttc
cagtcacaccaagagtttaaggattggtttagtaatcctatatctgggatggtggaggga
gaggaaaaagttaataaagaggttgttgatcgcctgcataatgtccttcgtccattctta
ctccgtcgattaaagagagatgtagaaaagcaacttcccatgaaagttgagcatgtcata
tactgtaggctgtcaaagaggcagagaaatttgtacgaggattttattgctagctcagag
actcaagctactcttgcaaatgccaatttttttgggatgattggtgttatcatgcaactt
cgcaaggtttgtaatcatcctgacctatttgagggtcgtccaatcgtcagttcttttgat
atgtgtcggattgatattcagttaagttcttctatttgctccatgctcttgcctagctcc
ttttcgacagttgacttagaagggttgggtcttttatttactcatcttgattatggcatg
acttcttgggagagtgatgaagtgcaagccattgagacccctgctactttaattatggaa
cgcactgatatggctgacctggaagtaattaagcctggactgaaatgtcagaaaaagcct
catggaacaaacattttcgaagagattcaaagggcaatttgggaggagaggataagagag
gcaaaggaacgtgcggaagctattgcatggtggaactccttgaggtgtaaaaaaagaccc
atctactcaacgactctaagggactttgttaccataaggcatcctgtatatgatattcat
caaaagaaggcaaaccctgtttcatacttgttcccatcaaaactggcagacattgttctc
tctccagttgaacgatttcaaaggatgattgacgtggttgaaagtttcatgtttgcaatt
cctgctgcccgagcatcccctcctgtttgctggtgcagtaaaagcgagacaactgtgttt
ctgaagccatcttacaagcagcgatgctctgatattctgtctccactattgtcaccaatc
aggcccgcaattgttcgtcggcaagtatatttcccagataggcgacttatacaattcgac
tgtggaaaattgcaggagctagcaattttgctgaggaaattaaaatcagaaggtcaccga
gctctgatattcactcagatgactaagatgcttgacatattagaagcgttcattaatttg
tatggttatacttacatgcggttagatggatcaacccaaccagaggagaggcagacatta
atgcagcgttttaacacaaaccccaaattttttcttttcatcttgtcaactcgcagtggg
ggtgttggtatcaatctagttggagctgacacggttattttttatgatagtgactggaat
cctgctatggatcaacaggctcaagatcggtgccacagaattggccagacacgtgaagtg
catatatatcgattgattagtgaaagcaccattgaggagaatattttgaagaaagcaaag
caaaagcgagcgcttgatgatttagttatacaaagtgggggatataatactgagttcttt
aagaagcttgatcctatggaactgttttcaggtcatcaaacactttcaattaaagacacg
cagaaggagaaaaaccagaacagtggagaagtttctgtaactaatgcagatgtggaagct
gcattaaaacatgtagaagatgaggcagattatatggcactaaagaaagttgaactggaa
gaagctgtggataatcaggaattcacagaagaagccagtgggagacttgaagaggatgag
tatgtaaatgaggatgatgaccctcaagaattaggtgactctgtttccactttgagtaaa
gagaatacattaatgctaaatggagctgatcttatggaagataaacccccctctattgtt
gccaaagaagatgatgttgacatgctggaagatgtgaaacagatggcagaagctgcagct
gcagcaggacaggctttatcagcctttgaaaatgagctacgccctattgatcgatatgcc
attcgttttctagagatgtgggatccaattatagataaagcagccttggaatctgaagtc
aggattgaggacactgaatgggaattggatcgcatcgaaaggtataaggaggagatggag
gccgaaattgacgaagatgaagagcctcttgtatatgaaagctgggatgcagattttgca
acaacggcttatcgacagcaagtagaagccttggctcaacatcagttaatggaggaactt
gaatatgaagctaaactgaaagaggaagctgaagaagaaaaaaacaggactccggcacca
agtgtttcaaagcccaagcctaaaaagaaacccaagaaagcaaagttcaaatctctgaag
aaaggatctttaaccactggcttaagaactgtgaaagacgagctacgagcagtgccaatg
gccatagatgatgatgttgccactagccttgattttgtgtctccaagttcgagtacacat
aaaaagcgtaagaagtctaaattaacaactgatggtgaagaagaaaagagatttaagaag
tccaaaaagtacaagagggatcctcatgacatttatgattcagatttagactccaactca
ttagatatgcagcaggatgatcatgcagaatcagatccatgtaaaagtctggttgtgttg
gaaccgaaaacagttggcaggagtaagatgggaggaaaaatatccatcactccaatgcct
gtgaaacgggtctttatgataaaatcagaaaaattgaagaagggaaatatttggtacaaa
gattgtattccatcagctgatttttggctgcctcaggaggatgcagtattgtgtgcagtt
gttcatgaatatggtcctaactggagctttgttagtgaaatacttcataacatgactgct
ggtggggcatatagggggatatatcgtcatcctgtccattgctgtgagaggttcagagaa
ttattccaaaaatacgtcttgttctctatggataatgcaaatcatgagaaaatcaacaat
acatgctctggaaaggctcttaaagtaacagaggataacattcgaatgttgttagatgtt
gcttctgagcaggcaaatagagagttattactgcagaaacacttttttgcattgctttct
actgtctggaaagcggcacatgttgaccgtagacaaaatctacacgccacttgcaacggt
ctctatttcgaccagagtttcttctcttcaattggccagcattcacaaaatcccctgaac
aaaccctctgaaaggatgacatttgctaattcggcccagagcaaaatgttattggcagct
gcactggatgactttggaagtaggccagagaatgacaaaatagtcctctctaaccagggt
aaagatatgctggtgactgaagatcaggtggatataactctggagttcccgaaagaggaa
agtgattcattatcctcatttccatctgttataaagttatcaataaaaggggatgaagca
ccaccttctttaaataagcacacaagaagtcatcatcttaaacattgttccgctgctgct
gagaatcgtttcagggaggtagcaaaagcttgtgaagaagacagttctcgatgggcttca
tcagcattcccaacaaatgatgcaaggtctcgacctggatccagggtacaatcttctgga
aagcaaaggtcttccatctcggacgttattaagccatctagatcaaagaccaaaagacct
tcagtggattctagtgaattgcaccgccatcagactggtccgttattcccgccaatgccg
tcgcttcaggaaccgactttggatctcccttcatctactgtggacaattttggatttgac
atggagagcgattttccctttgatttgaatggggaaagttcactggaaagggaggatttt
ggattggtcccacatgattatatagctgagttaatctcagggcttgatgattgtactaca
ttccctgaatatactgatattagataa
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integrated database retrieval system
