Trifolium pratense (red clover): 123902200 Help Entry 123902200         CDS       T08949                                  Name (RefSeq) phytochrome A   KO K12120   phytochrome A Organism tpra  Trifolium pratense (red clover) Pathway tpra04712   Circadian rhythm - plant Brite KEGG Orthology (KO) [BR:tpra00001]  09150 Organismal Systems   09159 Environmental adaptation    04712 Circadian rhythm - plant     123902200 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  PHY PAS PAS_2 GAF HATPase_c HisKA PAS_9 PAS_4 Motif Other DBs NCBI-GeneID:  123902200 NCBI-ProteinID:  XP_045807824 LinkDB All DBs Position LG1:26234737..26240288 Genome browser AA seq 1124 aa AA seqDB search MSASRPSQSSNNSGRSRNSARIIAQTTVDAKLHATFEESGSSFDYSSSVRVSGSVDGDQQ PRSNKVTTAYLNHIQRGKVIQPFGCLLALDEKTCKVVAYSENAPEMLTMVSHAVPSVGDH PALGIGTDIRTIFTAPSASALQKALGFAEVSLLNPILVHCKTSGKPFYAIIHRVTGSLII DFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVM AYKFHEDDHGEVISEIAKPGLEPYLGLHYPATDIPQAARFLFMKNKVRMIVDCHAKHVKV LQDEKLPFDLTLCGSTLRAPHSCHLQYMANMDSIASLVMAVVVNDSDEDGDSADVVLPQK KKRLWGLVVCHNTTPRFVPFPLRYACEFLAQVFAIHVNKEIELECQILEKNILRTQTLLC DMLMRDAPLGIVSQSPNIMDLVKCDGAALLYKNKLWILGATPSEPQIREIALWMYEYHTD STGLSTDSLSDAGFPGALKLSDTICGMAAVRITSKDIVFWFRSPTSAEIRWGGAKHEPGE QDDGRKMHPRSSFKAFLEVVKARSIPWKDFEMDAIHSLQLILRNSSKDTAMIDLNSKEIN TRLNDLKIEGMQELEAVTSEMVRLIETATVPILAVDVDGMVNGWNIKIADLTGLPVGEAI GKHLLTLVEDASIDIVKKMLNLALQGEEEKNVEFEIKTHGSQMESGPISLIVNACASRDL RENVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNQLIPPIFGTDEFGWCCEWNAA MIKLTGWKREEVMDKMLLGEVFGTQMSCCRLKNQEAFINLGIVLNKAMTGLETEKVPFGF FSRKGKYVDCLLSVSKKIDAEGVVTGVFCFLQLASPELQQALHIQHLSEQTALKRLKVLT YMKRQVRNPLAGIVFSSKMLENTDLGTEQKRIVNTSSQCQRQLSKILDDSDLDNIIDGYL DLEMAEFTLHEVLVTSLSQVMNRSNTRGIRIVNDVKEHIAMETLYGDSLRLQQVLADFLL ISINSTPNGGQVVIAASLTKEQLGKSVHLVNLELSITHGGNGVAETVLNQMFGNNGLESE EGISLHISRKLLKLMNGDVRYLKEAGKSSFILSVELAAAHKLKG NT seq 3375 nt NT seq  +upstreamnt  +downstreamnt atgtcggcctcgaggcctagccaatcatccaacaattcagggagatcaagaaatagtgca aggattattgctcagacaactgtagatgcaaaacttcatgccacttttgaggagtctggt agttcttttgactattccagttcggtgcgagtttctggctcagttgatggagatcagcaa ccgaggtccaacaaagtaacaacagcttacctgaatcacatacagagaggtaaggtgatt cagccttttgggtgcttgttagctttggacgagaaaacgtgcaaggtcgttgcatacagt gagaatgcacctgaaatgctgaccatggtgagtcatgctgttcctagtgtcggtgaccat cctgcccttggcattggaactgacataaggactatcttcactgcaccgagtgcttctgcg ttacaaaaggcactaggatttgcggaggtttcacttcttaaccctatcctagttcattgc aagacttctgggaagccgttttatgctatcatccatcgtgttaccggtagtttgatcatt gactttgagccagtgaagccttatgaagttcccatgactgcagcgggcgccttgcaatct tacaaacttgctgctaaagcaattacaagattgcaatctttgcctagtggcagcatggaa aggctttgcgatacaatggttcaagaagtttttgaactcacaggttatgacagggtgatg gcttataaatttcacgaggacgatcatggggaggtgatctctgaaatagcaaagccaggc ctagagccatacctaggtttgcactatccggccacagatattccccaggctgcacgcttt ttatttatgaagaacaaggtccgcatgatagttgattgtcatgcaaaacatgtgaaggtt cttcaagacgaaaaactcccgttcgatttaactttgtgtggttcaaccttaagggctccc catagttgtcatctgcagtacatggctaacatggattcaattgcttcattggttatggca gtagtagtaaatgacagtgatgaagatggagacagcgctgatgtagttctcccacagaag aaaaagagactttggggtttggtagtttgtcataacactactccaaggtttgttcccttt cctctaaggtatgcttgtgaattcctagctcaagtatttgccatccatgtgaacaaagaa atagagttagaatgtcagattcttgagaagaatatcctgcgtacgcagacgctgttgtgt gatatgctgatgcgagacgcacccttaggtattgtatcacaaagccctaatataatggac ctagtgaaatgtgatggggctgccctattgtataaaaacaagttatggatattaggagcg accccgagtgaacctcagataagagaaatagctttatggatgtacgagtaccacacggat tccacgggtttgagtacagatagcctgtctgatgcagggtttccaggggctcttaaactt agtgatactatatgtggaatggcagctgttagaataacttcgaaagacatagttttctgg tttaggtcgcccacttctgcagaaatccgatggggtggcgcaaagcatgaacctggcgaa caagatgatggtaggaagatgcatccaagatcatcattcaaggctttccttgaagttgtg aaggctaggagcataccgtggaaagactttgaaatggacgctattcattcgttgcagtta atactgagaaattcatccaaagatacagcgatgattgatttaaactcaaaggaaatcaat acaagacttaatgatttgaagattgaaggtatgcaggaattggaagcagtgacaagtgag atggtccggttgattgaaacagcaacagtgcctattttggcagtggatgttgatgggatg gtcaatggttggaatatcaaaattgctgatttgacaggtcttcctgttggcgaagctatt ggaaaacatttactcacacttgttgaggatgcttcaattgatatagtcaagaagatgctt aatctggcactgcaaggcgaagaagagaagaatgtcgaattcgagatcaaaacgcacggc tctcagatggagtctggtcctattagtttgatagttaatgcatgtgcaagcagggatctt cgtgaaaatgtagttggagtttgttttgtggcccaagatataactgcacagaagactgtc atggacaaattcacccgaatcgaaggcgattacaaggcaattgtacagaaccctaatcag ttaatacctcctatattcggtaccgatgaatttggctggtgttgtgagtggaatgcagct atgataaagttaaccggatggaaacgagaggaggttatggataaaatgcttctaggagag gtttttggaactcagatgtcttgttgtcgtctaaagaatcaagaagcttttattaatctc ggcattgtacttaataaagccatgactggtttggaaacagaaaaggttccttttggtttt ttctctcggaagggaaagtatgtagactgcctactttctgtgagtaagaaaatagacgcg gagggcgtagtaaccggggtcttctgcttcttgcagttagctagcccggagctacaacaa gcgttacatattcagcacctatctgaacaaacggctctcaagagactgaaagtattaact tatatgaaacggcaggtcaggaatcctttggctgggattgtgttctccagtaaaatgttg gagaatactgacttgggaaccgaacaaaaacgaattgtgaacaccagttctcagtgccag cgccagcttagcaaaattctcgatgactccgatctagacaacatcattgatgggtacttg gatcttgagatggctgaattcactttgcatgaggtactggttacctctcttagtcaagtc atgaataggagtaacactaggggtatccgaatagtaaatgatgttaaggagcatattgcg atggaaaccttgtacggtgatagtcttagacttcagcaggtcttagccgactttttacta atttccatcaattccacaccaaatggaggtcaggttgttatagcagcctccttaactaaa gaacagttggggaaatctgtccatcttgttaatttggagctcagcataacacatggcggt aatggggtggccgaaacagtgctgaaccagatgtttggaaataatggactagaatcagag gagggtattagcctacacatcagtagaaagttgttaaagcttatgaatggagatgttcgt tatttaaaagaagcaggaaaatcgtcgtttattctatctgttgaacttgcagcagctcat aagctgaaaggttaa

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