KEGG   Trifolium pratense (red clover): 123902894
Entry
123902894         CDS       T08949                                 
Name
(RefSeq) exosome complex component RRP43
  KO
K12586  exosome complex component RRP43
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    123902894
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpra03019]
    123902894
Messenger RNA biogenesis [BR:tpra03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     123902894
SSDB
Motif
Pfam: RNase_PH RNase_PH_C Gp18_dom_I
Other DBs
NCBI-GeneID: 123902894
NCBI-ProteinID: XP_045808669
LinkDB
Position
LG1:36378018..36384932
AA seq 302 aa
MSVPNATEDLSSEVEVDAFRRLFPVRYFERHLSESIRPDGRPLKEARDTSIFLGSVASAN
GSALVKIGSTTMLTAIKMEVMTPSLETPDEGCLAIDFHMPAICSPIVRPGRPAEAEPVVS
KQLSDTISSSGMIDLKELSLVSGKAAWMAYLDIYCLDADGALFDTALLSAVAALSHVKIP
AVAMNDDSKIVLMSDEDGKKQANEQVNKEKRKLTLKSIPLSLTCILHKSYILADPTAEEE
SIIETHVTIVLDTHGQLVSLYKPGGPVLAYTSAIQDCVALTRQRVKELKSFLDEANSAME
VE
NT seq 909 nt   +upstreamnt  +downstreamnt
atgagtgttccaaatgcaacggaggatttgtcgtctgaagtggaggttgatgcgtttcga
cgcctttttccggttcgatattttgagaggcatctttctgaatctattcgtcctgatggt
agaccattaaaggaagctagagatactagtatatttcttggttctgttgcatctgctaat
ggatcagcccttgtgaagattggatccacgactatgttgactgctattaaaatggaagtc
atgactccttctttggagacaccggatgagggttgcttagctattgatttccacatgcct
gcgatttgttctccgattgttaggcctggcaggcctgctgaagcagagccggttgtgtca
aagcagttgtccgacaccatttcaagttctggaatgattgatttgaaagaattgtcgttg
gttagtggaaaagctgcatggatggcatacttggatatctattgtttggatgctgatggg
gctctttttgacactgctttactttctgcagttgctgccttatctcatgtgaaaattcct
gctgttgccatgaatgatgacagcaaaatagtattgatgtctgatgaagacggaaagaag
caggcaaatgagcaagtcaataaggagaagaggaagcttacattaaaaagcattccatta
tcgttaacatgcatacttcacaagagctacatcttggcagatcctaccgcagaagaagaa
tcaataattgaaacccatgtgacaattgttttggatacacatggtcaactagtatctctt
tacaagcctggtgggccagttcttgcctatacttctgctattcaggactgtgttgccttg
accaggcaaagagtaaaggaactaaaaagcttcttagacgaagcaaattctgctatggag
gttgagtag

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