KEGG   Trifolium pratense (red clover): 123902958
Entry
123902958         CDS       T08949                                 
Name
(RefSeq) COMPASS-like H3K4 histone methylase component WDR5B
  KO
K14963  COMPASS component SWD3
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    123902958
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tpra03036]
    123902958
Chromosome and associated proteins [BR:tpra03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    ATAC complex
     123902958
    NSL complex
     123902958
   HMT complexes
    COMPASS/SET1 complex
     123902958
    COMPASS/SET1 complex (yeast)
     123902958
    MLL-HCF complex
     123902958
    MLL3/MLL4 complex
     123902958
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     123902958
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_1st Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_RIG_2nd Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_Nup120_160 Beta-prop_WDR35_TULP_N WD40_like Beta-prop_Vps41 Beta-prop_IFT140_1st eIF2A Beta-prop_HPS5 Beta-prop_NWD2_C Beta-prop_DCAF12 Beta-prop_WDR75_2nd Beta-prop_NUP159_NUP214 KNTC1_N Beta-prop_LRRK2 RMC1_N VPS8_N PROPPIN Beta-prop_IP5PC_F WDR54 Beta-prop_WDR11_1st Beta-prop_VPS8 DUF5888 CDtoxinA
Other DBs
NCBI-GeneID: 123902958
NCBI-ProteinID: XP_045808757
LinkDB
Position
LG1:20694709..20696988
AA seq 316 aa
MATSTTSSNGNQPFKPYRHLKTLTAHTRAVSSVKFSNDGKLLASGSLDKTLIIWSSTTLS
LLHRLTGHSEGISDIAWSSDSHYICSASDDRTLRIWDANSGDCVKTLRGHTHVVFCVNFD
PQSNFIVSGSFDETVRVWEVKTGKCIHAIKAHTMPVTSVHFNRDGSLIVSGSHDGSCKIW
DTNSGAPLKTLIDDKVPAVSFAKFSPNGKFILVATLNDTLKLWNYAAGRFLKMYSGHVNR
VYCITSTFSVTNGKYIVSGSEDRCVYLWDLQGKNMIQKLEGHTDTVISVTCHPIENKIAS
AGLDADKTVRIWVQDS
NT seq 951 nt   +upstreamnt  +downstreamnt
atggcgacgagtacgactagcagcaacggcaaccaaccattcaaaccgtaccgtcacctc
aaaaccctaacggcacacactcgcgctgtttcctccgtcaaattctccaacgacggtaaa
ctcctcgcctccggttccctcgacaaaaccctaattatttggtcctccaccaccctctct
ctcctccaccgtctcaccggccactccgaaggtatctccgatattgcctggtcatccgat
tcccactacatctgctccgcctccgacgaccgtaccctccgcatttgggacgccaacagc
ggtgactgtgtcaaaactctccgtggccacacacacgttgttttctgcgtcaattttgat
cctcagtccaatttcatcgtttctggttcgttcgatgaaaccgttagagtttgggaagtg
aaaactgggaagtgtattcatgctattaaagctcatactatgcctgttacctccgttcac
ttcaatcgcgacggttctctcatcgtttctggtagtcatgatggttcttgtaagatttgg
gatacaaattccggtgctccgttgaaaactctcattgatgataaggttcctgctgtttcc
ttcgccaaattctcccctaatggaaaattcatactcgttgctactctcaatgataccctt
aaattatggaactatgctgctgggaggtttttgaaaatgtattcgggacatgtgaataga
gtgtactgcataacttccacattttctgtaacaaatgggaaatacattgtcagtggttca
gaagatcgttgtgtgtatttgtgggatcttcaagggaaaaacatgattcaaaaactcgaa
ggtcatacagatacggttatatctgttacatgccatccaatagagaacaaaattgcttct
gctggccttgatgctgataaaactgtgaggatttgggtacaggattcttga

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