Trifolium pratense (red clover): 123903138
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Entry
123903138 CDS
T08949
Name
(RefSeq) putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
KO
K20827
RNA polymerase II-associated protein 2 [EC:
3.1.3.16
]
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tpra01009
]
123903138
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123903138
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.3 Phosphoric-monoester hydrolases
3.1.3.16 protein-serine/threonine phosphatase
123903138
Protein phosphatases and associated proteins [BR:
tpra01009
]
HAD phosphatases
Fcp/Scp phosphatases
123903138
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
123903138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RPAP2_Rtr1
Motif
Other DBs
NCBI-GeneID:
123903138
NCBI-ProteinID:
XP_045808982
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All DBs
Position
LG1:14414859..14420653
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AA seq
703 aa
AA seq
DB search
MEKNQPVFVKDAVLKLQMALLDGIQSEDKLFAAGSLISKSDYEDVVTERSIMHVCGYPLC
HNALPTDRPRKGRYRISLKEHKVYDLHETYMYCSPGCVVNSKAFAGSLQEKRCSVLDPEK
LNNVLRLFGNLNLEPMENSGKDGELGFSGLEIQDKTETGTGDVSLEQWVGPSNAIEGYVP
KKRDNSFKGSQKYTKKGSKASHGKLDDGKSLLSEFDFTSTIIMQDGYSVSKVPSGQTDKN
DDHQVKPTGILEQPKRDDNKVVRKDDNIQDLSTSFNSSLNLSTSKKEKEITKSCKGGLES
SLDPSVEKKVVHSITISERQCDVEQNDSERKSIQLKGKTSIFAANDDTSASNLDPDNVEV
NFHMEKTIGSCGTKPKSSLKSNGKKKLSRSVTWADEKTNSSGSKDLCTVKEFGNTKKESG
VADNIDADGDEDMLRCALAEACAIALNQASEAVASGDSDANDAVSEAGITILPHPPDAVE
EGTVDDDDILESNSVTPKWPRKPGISEFDLFDSEESWFDAPPEGFSLTLSPFATMWNSFF
SWITSSSLAYIYGRDVSFHEEFLSVNGREYPSKIVLTDGRSSEIKQTLARCLARALPAVV
AELRVSIPISTLEQAMVCLLDTMSFTDALPAFKMKQWQVVVLLFFDALSVCRIPALISYM
TDRRDLFLKVLSGSQIGNEDYDVLKDLVVPLGRAPHFSSQSGA
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagaaccagccagtttttgtcaaagatgctgttctcaaattgcaaatggccctc
cttgatggcatccaaagtgaagacaagctgtttgcagctggatctttaatatcaaagagt
gactatgaagatgttgtaactgaaaggtccattatgcatgtgtgtggctatcctttgtgc
cacaatgctttgccaactgatcgccctcggaagggtagatatcggatttcattgaaggaa
cacaaggtgtatgacctgcatgaaacttacatgtattgttctccaggttgtgtggttaac
agcaaagcttttgctgggagcttgcaagaaaagaggtgctcagttttagatccggagaaa
ctgaacaatgttcttaggttgtttgggaatttgaatctggaaccaatggaaaattctgga
aaggatggagaattaggtttttctggtttggaaatccaggataaaacagaaacaggcact
ggggacgtgtctttggagcagtgggttggaccatcaaatgcaattgagggttatgtgccc
aaaaaaagagacaacagttttaagggttctcagaaatatactaaaaaaggatccaaagct
agtcatgggaagttggatgatggcaaaagtttacttagtgagttcgacttcacgagtaca
ataattatgcaagatgggtatagtgtttcgaaggtaccatcagggcaaacagacaaaaat
gatgatcatcaagttaaaccaacaggcatattggagcagccaaaaagggatgacaataaa
gttgtcaggaaagatgacaatatacaagatctgtctacatcttttaacagtagtctaaat
ttaagtacctcaaaaaaagagaaggaaataaccaaatcatgtaaaggtggtctcgaatcc
tctcttgatccttctgttgaaaagaaagttgtccattccatcaccatatcagaaagacaa
tgtgacgtagaacagaatgattctgaaaggaaatcaatacaactcaaagggaaaacaagt
atttttgctgctaacgatgatacttccgcttccaatttagatcctgacaacgttgaagtg
aatttccatatggaaaaaactattggatcatgcggtactaaaccgaaatcttctcttaaa
tctaacggtaaaaagaaactcagtcgttcagttacttgggctgatgagaaaaccaacagt
tctgggagtaaagatctttgtacagtgaaagaatttggaaacactaaaaaggaatctggt
gtggcagataatattgatgctgatggtgatgaagatatgttacgttgtgcattagcagaa
gcttgtgcaattgcattgaaccaagcatcagaggcagttgcatctggagactcagatgcc
aatgatgctgtttctgaagctggaatcactatattgccacatcctcctgatgctgttgag
gaaggtactgtggacgatgatgacattctagaatcaaattcagttactccgaaatggcca
aggaaacccggaatttctgaatttgatttgtttgactctgaagagtcgtggtttgatgct
ccaccagaaggttttagtttgactttgtcgccttttgctactatgtggaattccttcttt
tcgtggataacatcatcttctttagcatatatatatgggagggatgtaagttttcatgaa
gaatttctgtcagttaatgggagagaatatcctagcaaaattgtcttgacagatggtcga
tcatctgaaataaaacaaacattagccagatgtcttgctcgagctttacctgcagttgtt
gctgagctaagggtatcaataccaatatctacattagagcaagcgatggtatgcttgttg
gatacaatgtcatttacggatgcactaccagcattcaaaatgaagcaatggcaagtggtt
gttctcttgttctttgatgcattgtccgtttgtagaatacctgctcttatctcatacatg
acagacaggagggacttgtttctcaaggttctgagtggttcacaaataggtaatgaagat
tatgacgttttgaaagatctcgttgtaccacttggtcgcgcacctcatttctcttctcaa
agtggagcgtaa
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