Trifolium pratense (red clover): 123903302
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Entry
123903302 CDS
T08949
Name
(RefSeq) eukaryotic initiation factor 4A-3-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03015
mRNA surveillance pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123903302
09122 Translation
03013 Nucleocytoplasmic transport
123903302
03015 mRNA surveillance pathway
123903302
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123903302
03041 Spliceosome [BR:
tpra03041
]
123903302
03009 Ribosome biogenesis [BR:
tpra03009
]
123903302
03012 Translation factors [BR:
tpra03012
]
123903302
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123903302
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123903302
mRNA cycle factors
Stress granule specific factors
123903302
Spliceosome [BR:
tpra03041
]
Complex C
Other components
EJC/TREX
123903302
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
90S particles
Helicases
123903302
Translation factors [BR:
tpra03012
]
Eukaryotic type
Initiation factors
eIF-4
123903302
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
Cas3-like_C_2
AAA_30
AAA_22
Helicase_RecD
CMS1
DUF1198
Motif
Other DBs
NCBI-GeneID:
123903302
NCBI-ProteinID:
XP_045809211
LinkDB
All DBs
Position
LG1:816558..818963
Genome browser
AA seq
403 aa
AA seq
DB search
MAAMRIKDDLQRGSIDMDLETTEGVKTFKSFEEMGIKDNLLRGIYQYGFDKPSAIQQRAV
APIIQGRDVIAQAQSGTGKTSMIALTVCHLVDTSVREVQALIVSPTRELASQTEKVISAI
GDYTNIRAHACVGGKSVGEDIRKLEHGGVHVVSGTPGRVLDMIKRRTLGTRAIKLLVLDE
SDEMLSRGFKDQIYDVYRYLPPDLQVVLVSATLPHDILEMTNKFMTDPVRILVKRDELTL
EGIKQFFVAVEREEWKFDTLCDLYDILTITQAVIFCNTRRKVDWLTEKLRNNNFTVSSMH
SDMPQRERDAIMGEFHAGTTRVLIATDVWARGIDVQQVSLVINYDLPNNRELYVHRIGRS
GRFGRKGVAINFVKNDDIKILRDIEQYYSTQIIDLPSNVADLI
NT seq
1212 nt
NT seq
+upstream
nt +downstream
nt
atggctgctatgagaataaaggacgatttacagcgaggaagcatcgatatggacttggag
acaacggagggtgtgaagacgtttaaaagttttgaggagatgggaatcaaagacaattta
ctccgtggaatctaccaatacggttttgacaaaccatctgcgattcaacaacgtgctgtt
gcgcctatcattcaaggtcgcgacgtcattgctcaagctcaatctggaactggcaagact
tccatgattgctctaactgtttgccatcttgtggatacttcagtgagagaggtgcaggct
ttgattgtgtcgccgacaagggaactagcctcacaaactgaaaaagttatatccgctatt
ggagattacacaaatattagagcccatgcttgtgtcggagggaaaagtgtgggagaagat
ataaggaaacttgaacacggaggagttcatgtagtgtctggaactcccggtcgagttctt
gacatgatcaaaaggagaacattgggcacaagagctatcaagttgcttgttctggatgaa
tctgatgaaatgctgagcagaggttttaaagatcaaatttatgatgtgtacagatatctc
ccacccgatcttcaggttgtcctggtttccgctacgctacctcatgatattttggagatg
acaaataagttcatgacagatcctgtccgaatccttgtaaaacgtgatgaattgacattg
gagggcatcaagcaatttttcgttgccgttgaaagggaggaatggaagtttgacaccctg
tgcgatctttatgatattcttaccattactcaagctgtcatattctgtaacactaggcga
aaggtggactggttaactgaaaaattgcgaaacaataatttcaccgtctcctcgatgcac
agtgacatgcctcaaagagaaagagatgcaattatgggagaatttcatgcgggaacaacc
cgagtattgatagcaacagatgtttgggctcgtggcattgatgtgcagcaggtttcccta
gttattaattacgatcttcccaataatcgggagctgtatgttcatcgcattggccgttct
ggacgttttgggagaaagggtgttgcaataaattttgtgaaaaatgatgatatcaagatt
ctaagagatattgaacaatattacagtacgcagattattgatctgccatcaaatgttgct
gatcttatataa
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