Trifolium pratense (red clover): 123903969
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Entry
123903969 CDS
T08949
Name
(RefSeq) IgM protease-like
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03013
Nucleocytoplasmic transport
tpra03015
mRNA surveillance pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123903969
09122 Translation
03013 Nucleocytoplasmic transport
123903969
03015 mRNA surveillance pathway
123903969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123903969
03041 Spliceosome [BR:
tpra03041
]
123903969
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
123903969
Spliceosome [BR:
tpra03041
]
Complex C
Other components
EJC/TREX
123903969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
123903969
NCBI-ProteinID:
XP_045809614
LinkDB
All DBs
Position
LG2:55363756..55367920
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AA seq
713 aa
AA seq
DB search
MSSNSKYPILDDKPINQWKVTALKEELKRRKLATKGLKEDLINRLDEALRNERETAEASP
EQEAAVGSEKDGANGLNAQVDGVKDAQTDNVDAEVVDTIEKENFQTFETSEQGNSDAVKV
SEVVDNDSIKNVEQDGVTEPVDVNNSVSAMDVEGEHAVLPVGGESANVGEEVVAHPSTVE
TTVTVTETVVTETVSTEAVVSGQDSYSSEKNNEDSAIKLENEESKAQLDIEDSKPQLESD
TKPPSDDPVPDSSAPENQVSEVNPSLGSQVKSDSFSTDSVSINQKNELKDTIIANNNVKL
EQDNVRPEMVEEPSSRNVPVYDELHSMDVGGLHEKKPSVEENNNSVTSPDLNKTNSSDDV
GYPEKLNLDRSSGDDSMEEDLPETRQYDSKFNVDELVEKVENNEVPMVKEERNTTDVGDG
VSARKSDTHQDIDISPVSLTEKRKYPEQTLAANIEPAKRQRRWNTETVKGSDLQSTTPRS
ATTPKDGQITLKRNFSRSNSSATDDTPKERIVPPSRRTPTNSLRIDQFLRPFTLKAVQEL
LGKTGSVSSFWMDQIKTHCYVTYSSIEEATETRNAVYNLQWPPNGGRLLVAEYVDPEEVK
MKLEAPPTPTAPVISAPTVPPAPPSQPEPSPRQQREQLLPVTLPPPPPLSRPPPVARERL
PSPPPLPEKADPPIVTLDDLFRKTKATPRIYYLPLSEEQVAAKLAAQGKNTRQ
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgaattcaaaatacccgattttggacgataagcccattaaccagtggaaggtt
acagcgttgaaagaggaattgaagagaaggaagttagctaccaaaggtttgaaggaagat
ttaattaaccgtttggatgaagctcttcgcaatgaaagggagactgctgaggcttcccct
gaacaggaggctgctgtgggttcggagaaggatggggctaatggtttaaacgctcaagta
gatggggtgaaagatgcccagactgataatgtggacgctgaagtcgttgatacgattgaa
aaggagaatttccaaacatttgaaacttctgaacaggggaatagtgatgcagtgaaggtt
tcagaggttgtggataatgacagtattaagaatgttgagcaggatggtgttaccgaacca
gttgacgttaataatagtgtgtcggccatggatgttgaaggtgaacatgcagttttgcct
gttggtggtgaatctgctaatgtgggagaggaggtagttgcccatccttctactgtggag
accactgttacagtcaccgagaccgtggtcacagagactgtatcaacagaagcagtagtc
agtggtcaggattcttatagttcagagaagaataatgaggattcagcaatcaagctagag
aatgaggaatcaaaggcgcagctggacattgaggactcaaagccccaattggagtctgac
acaaagcccccatccgacgatcccgtgcccgactcttctgcacccgaaaaccaggtatct
gaggtcaaccctagtttagggtctcaagtaaaatctgattctttttctactgattctgtg
tcaattaatcaaaagaatgaactaaaggatactataattgctaataataatgtcaaatta
gaacaagataatgttaggccggagatggtggaagaaccatcgtccagaaatgtacctgtt
tatgatgaattgcattcaatggatgttggagggctgcatgaaaaaaagccatctgttgaa
gaaaataacaacagtgttacaagtccagacttgaacaaaaccaatagtagtgatgatgta
gggtatccagaaaagttgaacttggacagaagttctggtgatgattccatggaagaggac
ttgcctgagactaggcaatatgattctaagtttaatgttgatgaacttgtagagaaagtt
gagaataatgaagtacctatggtcaaggaggaaaggaatacaacagatgtgggagatggt
gtatccgcaagaaaaagcgatacccaccaagatattgacattagtcctgtttcccttact
gagaagcgaaaatatcctgaacaaacattagctgcgaacattgagcctgcaaaaaggcag
cgcaggtggaacactgaaacagttaaagggtcagatctgcaaagcactactcccagatct
gctactacacccaaggatgggcaaattactctgaagcgcaacttctctaggtctaattcc
tctgcaactgatgacacccctaaagaacgcattgttccaccatctcgaaggaccccaact
aattccctcaggattgatcaattccttcgtccatttaccctaaaagcagtgcaagaactt
cttgggaaaactgggagtgttagcagtttctggatggaccaaataaagacccattgctat
gttacttactcatccatcgaagaggccactgagacacggaatgctgtgtataatttgcaa
tggcctccaaatggtgggcgactcttagttgctgagtatgttgatcctgaagaagtgaaa
atgaagttagaagctcctcctactccaactgcccctgtcatcagtgctccaacagttcct
cccgcaccaccttcgcagccagagccttccccacgtcagcagagggagcagcttcttcca
gttactctcccacctccacctccattgtcaaggcccccaccagttgcaagagaacgtctt
ccatctcccccaccccttcctgagaaagcggacccacctattgtcactctggacgacctc
ttccgcaaaaccaaagcaactcctcggatctattatttacctttgtctgaagagcaagtt
gctgcaaaacttgcggcacaaggtaaaaatacgaggcagtag
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