KEGG   Trifolium pratense (red clover): 123904452
Entry
123904452         CDS       T08949                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1b
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    123904452
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tpra04121]
    123904452
   03036 Chromosome and associated proteins [BR:tpra03036]
    123904452
Enzymes [BR:tpra01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     123904452
Ubiquitin system [BR:tpra04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    123904452
Chromosome and associated proteins [BR:tpra03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     123904452
    Noncanonical PRC1 (PRC1.1)
     123904452
    Noncanonical PRC1 (PRC1.3/1.5)
     123904452
    Noncanonical PRC1 (PRC1.6)
     123904452
SSDB
Motif
Pfam: zf-C3HC4_2 zf-RING_2 zf-C3HC4 zf-RING_UBOX zf-C3HC4_3 zf-RING_5 zf-Nse zf-RING_6 RmuC zf-rbx1 zf-RING_4 SirC_C zf-C3HC4_4 zf-RING_10
Other DBs
NCBI-GeneID: 123904452
NCBI-ProteinID: XP_045810077
LinkDB
Position
LG2:complement(25285018..25289947)
AA seq 371 aa
MAQHERLYMERDNDIDYDVIGERDRQHNDAALTLSSKDDEKQLFKSNESSTKCDVRLSET
HKEFQCPICLGIIKKAKIVKQCKHRFCKECIEKAFRLSNHECPICRVHCPSRRALMDDME
FDSKIANLFRCKETSDKEEMTLNEINIEIEKAKQKAYKSILEKQHVAASMSTKDSGVKEI
IESSRRSEVEQPIPQNNVLASPNNLMDFIRSSSLVWERSGQRRNNRPIADNPTANGSNRI
SKLIDHLRNLSRENKDELDVFVKFISFEEERVQNLGMPYLLCKPTMSISQLREYVALETS
LQTEEVELYVIKECQPNIIVGDAKFDPSDIKSELLAKEEEILAQLIPENLNRGHLVVAYK
KKMWDLNMALC
NT seq 1116 nt   +upstreamnt  +downstreamnt
atggcacaacacgagcgcttgtacatggaaagagacaatgatattgattatgatgttatt
ggtgagagagaccgtcaacataatgatgctgcacttacgctttcttcaaaggacgacgaa
aaacaactgttcaagtcaaatgaatccagtacaaaatgtgatgtacgcttgtcagaaaca
cacaaggaatttcaatgtccaatttgcctaggcatcatcaaaaaggccaaaatagtaaag
cagtgcaaacaccggttttgcaaagaatgcattgaaaaagcattccgccttagcaatcat
gaatgtccaatttgtcgtgtacactgtccaagtagacgtgctctaatggatgatatggaa
tttgattcaaagattgctaatttatttcgatgcaaagaaacatcggataaagaggaaatg
actttaaatgagatcaacatagagattgagaaggcaaagcaaaaagcttataaatcaatt
cttgagaagcaacatgttgcagcttcaatgagcaccaaagatagtggggtcaaagaaatt
atagaatccagtagaagaagtgaggttgaacaaccaattcctcaaaacaatgttcttgca
tctcctaataacttgatggattttattagatcttcttcacttgtatgggaaagaagtggc
caaaggaggaacaatcgaccaatcgctgataatcctactgcaaatggaagcaaccgcatc
tccaaattaatcgaccatcttcgtaaccttagccgagaaaataaagatgagctggatgtt
tttgtcaagtttatctcttttgaagaggaaagagtccaaaatttggggatgccatacctt
ctctgcaagcctaccatgtcaatcagtcaactgcgtgagtacgttgcattagaaacttct
ttgcaaactgaagaagttgaattgtacgtaattaaagagtgtcaacccaacattatagtt
ggagatgcaaaatttgacccaagtgacattaagtcagaattattagcaaaagaggaagaa
attttggctcaactcattccagaaaacctcaatcgcggccatttggtcgtagcttacaag
aagaagatgtgggacttaaacatggcattatgttga

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