KEGG   Trifolium pratense (red clover): 123905379
Entry
123905379         CDS       T08949                                 
Name
(RefSeq) sm-like protein LSM4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03018  RNA degradation
tpra03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    123905379
  09123 Folding, sorting and degradation
   03018 RNA degradation
    123905379
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tpra03019]
    123905379
   03041 Spliceosome [BR:tpra03041]
    123905379
Messenger RNA biogenesis [BR:tpra03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     123905379
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     123905379
Spliceosome [BR:tpra03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    123905379
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 123905379
NCBI-ProteinID: XP_045810938
LinkDB
Position
LG2:72347386..72349893
AA seq 113 aa
MTVSSLEILPLSLLKSARGQPISVELTNGETYNGDLVDSNALMNIHLRGVICTSKDGDRL
WCMPECYIYGNTIMCLRIPNEGKNATDVEQEVGENQGQHIKKRGHDFRNLSYD
NT seq 342 nt   +upstreamnt  +downstreamnt
atgacagtgtcatctttggaaattctgccactttctcttctcaagagtgctcgaggacaa
ccaatttcagtagaattgacaaatggagagacatataatggggatttggttgattccaat
gcactgatgaacattcatcttagaggagtcatttgtacttctaaggatggagatagactt
tggtgtatgcccgaatgctatatttatgggaatactattatgtgtcttcgaattcctaat
gagggaaagaatgcaactgatgtggagcaagaagtgggagagaatcagggccagcacatc
aaaaaacgtggccatgatttcaggaatctcagttatgactga

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