Trifolium pratense (red clover): 123905502
Help
Entry
123905502 CDS
T08949
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
123905502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123905502
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
123905502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40
Beta-prop_THOC3
WD40_Prp19
Beta-prop_WDR3_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_Gbeta
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML
Beta-prop_WDR36-Utp21_1st
NBCH_WD40
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR75_1st
Beta-prop_RIG_2nd
WD40_RFWD3
Beta-prop_SCAP
Cytochrom_D1
Ge1_WD40
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_NOL10_N
Beta-prop_VPS8
Beta-prop_NWD2_C
KNTC1_N
Tricorn_N
CSTF1_dimer
Mito_carr
Motif
Other DBs
NCBI-GeneID:
123905502
NCBI-ProteinID:
XP_045811083
LinkDB
All DBs
Position
LG2:28249735..28257486
Genome browser
AA seq
434 aa
AA seq
DB search
MENNSIISEQTVQDGKLYRHLNSLIVSHLRHNNLTQAATAVASATMTPLNVEAPPNKLLD
LVAKGLAAEKDDVSRGTSSSPFQDLGASLPLPRPGATAIDFSSLPDLKGSSKGFPKHETR
HLSEHKNVARCARFSPDGRFVATGSADTSIKLFEVSKIKQMLLPDAKDGPVRSVVKTYYD
HIQPVNDLDFHPQGTILVSGAKDQTIKFFDVSKTNAKRSYRVIQDTHNVRSVSFHPSGDF
LLAGTDHAIPHLYDINTFQCYLSANVPDNSPNGAINQVRYSCTGAMYVTASKDGAIRLWD
GITANCVRSITAAHGTAEATSAIFTRDQRFVLSCGKDSTIKLWEAGSGRLVKQYLGAVHT
QLRCQAIFNATEEFILSIDELNNEVVIWDAMTTDIVAKWPSNHVGAPRWLEHSPVESAFI
SCGTDRSIRFWKEV
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacaacagtatcatctcggagcaaacagtgcaagatggaaaactctacagacac
ctcaattctctaattgtctctcatcttcgtcacaacaatctaactcaggctgcaactgct
gttgcttcagcaactatgacaccattgaatgttgaagccccgcccaataagcttcttgac
ttggttgctaagggtcttgcagcggaaaaggatgacgtgtcaagagggacttcatcttct
ccctttcaagatttgggtgcatcattacccttgcctcgtcccggtgcaacagccattgat
tttagctctttgccagatttaaaaggttcgtcaaaaggtttcccaaagcacgagacacga
cacctttcagaacacaagaatgttgccagatgtgctaggtttagccctgacggaaggttt
gttgccactggaagtgcagatacatcaataaagctatttgaggtttcaaaaatcaagcaa
atgttgctaccagatgcaaaggatggtcctgtgcggtctgttgtaaaaacatattatgac
catatacaaccagtaaatgatttggattttcatccgcaaggtactatcctggtctctgga
gccaaagaccagacaataaagttttttgatgtttcaaaaaccaatgccaagagatcttac
agggttatccaggacacgcacaatgttcgctctgtatcttttcacccctccggggacttt
ctgttggcaggcactgatcatgcgattccacatttgtatgatataaatacctttcagtgt
tatctttccgcaaatgtcccagataatagccctaatggagccataaaccaggttagatat
tcttgtacaggtgccatgtatgttacagcatcgaaagatggtgctattcggttgtgggat
ggcatcactgccaattgtgtgcgctcaataactgcagcacatggaacagcagaggctacc
agtgcaatttttacaagagatcaaaggtttgtcctctcctgtggtaaggactctaccata
aagctttgggaggctggttctggaagattagtcaaacaatatctcggtgccgtacataca
caactaagatgccaggctatttttaatgcgacagaagaatttattctatccatagatgaa
ctgaacaacgaggttgttatctgggatgcgatgacaacagatatagtagcaaaatggcct
tctaatcatgttggtgcaccacgctggcttgaacactcgccagtagagtctgcttttatt
tcgtgtggaactgatagatcaattcggttctggaaggaggtttaa
DBGET
integrated database retrieval system
