Trifolium pratense (red clover): 123905551
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Entry
123905551 CDS
T08949
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123905551
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tpra03019
]
123905551
03041 Spliceosome [BR:
tpra03041
]
123905551
Messenger RNA biogenesis [BR:
tpra03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
123905551
Spliceosome [BR:
tpra03041
]
Complex B
Other components
Prp19-related factors
123905551
Complex C
123905551
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
ARM_TT21_C
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
123905551
NCBI-ProteinID:
XP_045811156
LinkDB
All DBs
Position
LG2:28776787..28781145
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AA seq
915 aa
AA seq
DB search
MAAIPSELYPSENDLVYEEELLRNTFNLKLWWRYLIARSDSPFKKRFVIYERALKALPGS
YKLWYAYLRERLEIVRSLPVTHSMFETLNNTFERALVTMHKMPRIWILYLETLTKQKLVT
RTRRTFDRALCALPVTQHDRIWEHYLYFVSQKGIPIETSFRVYRRYLQYDPNHIEDFIEF
LINSEKWQEAAERLASVMNDDKFYSIKGKTKHRLWLELCDLLTRHANDVSGLNVDAIIRG
GIRKFSDEVGRLWTSLAEYYIRRGLHEKARDVFEEGMSTVVTVRDFSVIFDSYSQFEESM
LAYKMEDMGMSDEEDEEGEDGVKEEEEEEDEDIRFKYEDFDKKILRGFWLNDKKDIDLRL
ARFDYLMERRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPMKAV
GKPHTLWVAFAKLYEQHKDLANARVIFDRAVQVNYKTVDNLASVWCEWAELELKHKNFKG
ALELMRRATAEPSVEVKRKVAADGNQPVQMKLHKSLRLWTFYVDLEESLGNLESTREVYE
RILDLRIATPQVIINYAYFLEEHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRY
GRTKLERARELFENAVETAPADQVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNEK
LSMYEIYIARAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELERSLGEIERARGI
YVFASKFADPRSDPDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQ
KDQTVNLDEAKDKLKEAGIPEDEMAALERQLAPAADKAKERKVGFVSAGVESQSDGGIKT
NANHEEIELPEENDSDEDDGDNIEIAQKDVPSAVFGGLIRKRDELETNEVEGGAKEKDDE
NRLGALERIKKLRRN
NT seq
2748 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgattccatcagaattatatccatcagaaaacgacttagtttacgaagaagag
ttacttcgtaatactttcaatctcaaactatggtggcgataccttatcgcaagatcagat
tcgccgttcaaaaagcgtttcgttatctacgaacgtgccctcaaagctcttcctggaagc
tacaaactctggtacgcttatctccgtgaacgtctcgaaattgttcggagtctccccgtt
actcattcaatgtttgaaaccctaaataatacttttgaacgtgcacttgttacaatgcat
aaaatgccacgaatttggatcttgtatcttgaaaccctaacaaagcagaaattagttaca
agaactaggagaacttttgatagagctctctgtgctcttccggttactcagcatgataga
atttgggagcattatttgtattttgttagccaaaaggggattcctatagaaacctctttt
agggtttatcgtaggtacctgcaatatgatcctaatcacattgaggattttattgaattt
ttgattaattctgaaaagtggcaagaggctgctgagaggttggcttccgttatgaatgac
gataaattttattcgataaaggggaagactaagcataggctttggctagagttgtgtgat
ttgttgactaggcatgccaatgatgtttctgggttgaatgttgatgcgattattaggggt
gggattaggaagttttctgatgaggttggtcgattatggacttcgcttgcggagtattac
attaggagggggttgcatgagaaggctagggatgtctttgaggaggggatgtctacagtt
gttactgtgagggattttagtgtgatatttgattcctactcgcaatttgaagagagtatg
cttgcttataagatggaagatatgggtatgagtgatgaagaagatgaagaaggtgaagat
ggagtgaaggaggaagaggaggaggaggatgaagatattcgtttcaaatacgaggacttc
gataagaagattttacgtgggttttggctgaatgacaaaaaggacattgacttgagattg
gctaggtttgattatctcatggagaggaggcctgaattggctaatagtgtgcttttacgt
caaaatcctcataatgtggaacaatggcacaggagggtgaagctttttgagggtaacccc
actaagcagatacttacttacacagaggctgtgaggactattgatcctatgaaggccgtg
ggaaaacctcatacgttgtgggtggctttcgcaaagctttacgagcagcataaagatctt
gccaatgctcgggtcatttttgacagggcagtgcaggtgaactacaaaactgtggataat
ctggccagtgtctggtgtgagtgggctgaattagagttgaaacataagaatttcaaagga
gcacttgagcttatgagacgggctacggcagagccatcagttgaggtcaaacgaaaagtg
gcggctgatgggaatcaaccggtgcagatgaaacttcataaatctttgagactgtggact
ttttatgttgatttggaggaaagtctaggtaatttggagtctactcgggaagtttatgaa
cggattttggatttacgaattgccacgccacaagtaataatcaattatgcatacttcctt
gaggaacacaaatactttgaagatgcttttaaggtttatgaaagaggagtcaagatattt
aagtacccacatgttaaagatatttgggttacatatctgtctaaatttgtgaagagatat
ggaaggacaaagttggagagagcaagagagctgtttgagaatgcggttgaaacggcccct
gctgatcaagtgaaacctctatatctgcaatatgctaagctggaggaggattatggacta
gcaaagcgagctatgaaggtctatgatcaagcaaccaaagctgttcccaacaatgagaag
ttaagcatgtatgaaatatatattgctcgtgcagctgagatatttggtgtacccaaaaca
cgagagatctacgagcaggcaattgaatctggtcttccagataaggatgtcaaaactatg
tgtttgaagtatgctgagctggaaagaagcttgggagaaattgaacgtgcccgtggaata
tatgtatttgcctctaagtttgctgatccacgttctgatccagacttttggaataagtgg
catgaatttgaggttcagcatggaaatgaggatacctttagagaaatgctacgaattaaa
cggagtgtctctgctagctacagccagacacattttatactgcccgagtatctgatgcag
aaagatcaaactgtgaatcttgatgaagccaaagacaagctaaaagaggctgggatccct
gaggacgaaatggctgctttggaaaggcaattagcccctgcagctgacaaggcgaaagag
agaaaagttgggtttgttagtgctggagttgaatcacagtccgatggagggataaaaact
aatgcaaatcacgaggaaattgagttaccagaagaaaatgactctgatgaggacgatggt
gataatatcgagattgcacaaaaagatgtcccttctgctgtttttggtggtttgattaga
aagagagacgagcttgaaactaatgaagtagaaggtggtgcaaaagaaaaggatgatgaa
aatcggcttggtgcccttgagagaattaagaaacttagacgaaactag
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