Trifolium pratense (red clover): 123905582
Help
Entry
123905582 CDS
T08949
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
tpra
Trifolium pratense (red clover)
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tpra03009
]
123905582
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
123905582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
RYDR_ITPR
Motif
Other DBs
NCBI-GeneID:
123905582
NCBI-ProteinID:
XP_045811204
LinkDB
All DBs
Position
LG2:complement(50898225..50918833)
Genome browser
AA seq
2701 aa
AA seq
DB search
MATSSHAQAVKSLNKSPGRRRFVFKSFSEKLDDIEINVFRSLHQVKAEPSEGSSFFRDCL
VKWREENTTEDFISLYEEVISCTQTLPLVLLHKETIISKLLSRLHMKARLSLEPILRLIA
DLSRDLLDEFVPLFPRIVDSLASLLESGADREPDIIEQIFTSWSYIMMYLQKYLIHNPSE
VLTVTSKLRYYPKEYVQQFMAEAMSFVLRNAPDEQLKRGIRRVIAEAVKKPSPCRESGVE
LLLYNIMKGYSPRFHSKAERVLQLLTSETVHSIGNGADQESRTILNIIKSVFKKLCETME
PEELNLAWSCLYKKVHECVSTGNITHLRRILSVLVSAVKVQKGQKVSDYKLMLELILLLV
RSYITPLGVTESQDDTCLVVDKILKLMLATLDGLCSCNKSMISECATQWAPIFKSRSSSL
LRFIEKLLQKDLCLHAFRNNVISAINELLEISEEKVIQLLQSFCEKIQLDIRDSDFVDGD
SREALARICNHFKGTIRSWIEKINDIARSDVSCEIDERMSLLWGVVNCYSHMTIVDTVPS
LLVNLMDAVDQLLTVKAVLIADSSKKAWESLLGASLSSYSRLYNDSNLGADETKKFLSFA
KQYKSSSHVLLAVAGYLESKYGPSLEDTGCRMYHPELEEMSAEAVTSFSGNLCDSDKELR
ISTLKILCHYKSLGEENSSVDQSAAKKRKIEVSPTSVVDNTGNNPLLVLLSIETTPVSIS
TSRSIQRLISKIQMDLSSGRITHVYAPLVLSGLFGILNNRFSYLWNPVLECISVLVNLHF
SLVWDTLINYLEKCQAMRETSSSLHDSANGASFDQPAGLHGCFKLFVHHESDSTPSSTIL
TLLLQALQKIPTVIESRSRQFIPLFLKFLGYNNLDLASVGSFDSHACKGKEWKLILKEWL
NLLKLMKNPKSFYLSQFLKEVLQNRLIEEDDPEIQIRVLDCLLIWKDDFFLPYTEHLRNL
ISSKFTREELTTWSLSRESKMIEECHRAYLVPLVIRLLMPKVRKLKGLASRKKASICHRK
AILSFIAGLDITELPLFFALLIKPLQIVEKTDGPTNLFWTLPISCSSEFQASSLLEYFTL
DNIATLSWKKKYGFLHVIEDIVGVFDELHIRPFLDLLVGCVVRVLESCTSSLDNVKLDGL
SSDQHNSSTNSNSLGEERVPENQILIGNTSNQLKDMRSLCLKIVSLVVNKYEDHEFGSNL
WDRFFSSVKTLIEKFKQEAASSEKPSSLLSCFLAMSANHKLVPLLCREESLIPDIFSIVS
VNSASEAIVYCVLKFVENLLSLDNQLDYEDSSAHRVLLSNIEVLMDSICCLFGSDNAAKR
KLIKSPGETVLRIFKFLPKYIKEAEFAKRFVDILLLFLEKKTQDSDVCIEVLQVIQNIIP
ILGNGSTAKILSAVSPLYISAELDMRLRICDLLDVLVASDASVLSVAELLRKLNTTSTLG
WLDHGVILNAYSIINIDFFRNVQVEHALLVLSHCVLDMSSEETTFVCSAQNSLLSFVDFS
ALILSQQGSSEQELSIMQNTDGCWTKSSIQRITKKFLLKHMEDAMDGPLAVRKGWMKLLS
QIASKLPDVLNLKSLEVLCNDDSEANFFDNISDSVIGKRVKALSLFRNVISTNKLSEFIT
EKVFMRHFFNMLFDEKEVKVDHMKTACIETIASVAGQMGWKSYYALLNKCFQGASRSPDK
QKLFIRLICAILDKFHFSELSHTEEPKKSLVCVSDTGVTNVVSSVILGNSGASDVNTDIQ
TCLYKVVLPKIQKLMDSDSERVNVNISLAALKLLKLLPGDVMDTYLPTIVHRISNFLKSH
LESIRDEARSALATCLKELGLEYLQFIVKVLRSTLKRGYELHVLGYTLNFILSKCLSSAV
SGKIDYCLGDLLSVIENDIFGDVAEQKEVEKIASKMKETKKKMSFESLKLVAQNVTFKSY
ALKLLAPVTAHLQKHVIQSVKGKLETMLHSIAAGIESNPSVDQTDLFVFIYGIVEDGLKN
EIGWHENKLIKSEDKDRCTNAKRIFSGRVVSSGLLCSHLITVFGLRILHKRMKGLKQGVK
DENILSLLDPFVKLLSDGLCSKYEDILSASLGCLTVLVKLPLPSLQAHAERIKSTVLDIA
QSSVNSSSPLMQSCLTMLTMLLRNTEISLTQDQIQILIQLPIFLDIERNPSLIALSLLKG
IVNRKLPVAEIYDIVTRVAELMVTSQMESIRKKCSKILLQFLLDYRLSEKRLQQHLDFLL
SNLRYEHSTGRESVLEMIHAIIVKFPRSVLDEQSQTFFIHLVACLANDNDNIVRSMSGAA
IKKLIGSVSPNALDSILKYALSWYLGDKQQLWAAAAQVLGLLIEVIKNGFLKHIDCVLPV
TRRILQSSIHAVTNRQQGFESESIVPLWKEAYYSLVMLEKMIHQFDDLCFAKDLEDIWET
ICEMLLHPHSWLRNRSVRLIGLYFERVTDVNRQNQQSSFSSYFMMSPSRLYLIATSLCCQ
LKMPLIDDADSNLMTQNIVFSICGVHSLMGQTACIDPPAFWSKLEQHEQDRFLKAFDLMN
AKKGKSMFLSSSLTSSVSEDNSQLNVKNTQYTLVSLLLKKIGKIALQTDAIQMGIVFNSF
GKIMAQIQSSKEDCYADVVLLPLYKVSEGFAGKVVADNLKKLAEDTCGKIEHILGTQKYV
AVYNLIRKNLSSKRNKRKQEEKVMAATNPMRNAKRKLKMSAKHRAYKKRKITTLKMGKWG
H
NT seq
8106 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtcgtcacacgctcaagctgtcaagtctctcaataaatcacccggccgccgt
cgttttgtctttaagtcattctctgagaaactagatgatatcgaaatcaatgtgtttaga
agtcttcatcaggttaaagctgagccatctgaaggttcatcttttttcagagactgcctt
gtaaaatggagggaagagaatactacagaagatttcatctcattgtacgaagaagtcatt
tcttgtacacaaacactgcccttggtgctgttgcacaaggaaacaataatttcaaagcta
ctttctaggttgcacatgaaagcaaggctatcacttgaaccaattctcaggttaattgcg
gatttatctagagatctcctagacgagtttgttccgctatttccaagaattgttgattct
ttagcatctcttctagaaagtggtgctgatagggaaccagatataattgagcagatcttc
acgtcatggtcatatattatgatgtatctgcagaaatatttaatacacaacccatcagag
gtgcttacggtcacttcaaaattaaggtattatccgaaggagtatgttcaacaattcatg
gcagaggcaatgtcctttgttttgagaaatgctcctgatgagcagctgaaaagaggaatt
agaagagtaatcgccgaggcagtgaagaagccatctccatgccgagagtctggtgttgaa
ttattgctttataatattatgaaaggttactcaccaaggttccattcgaaagcagagcgt
gttttacaattattaacaagcgaaacagttcattccattggtaatggagctgaccaagag
tcaagaaccattttaaacatcataaaatctgtgtttaagaaattatgtgagacaatggag
cccgaagagttgaatttggcatggagttgcttatataagaaagtgcacgaatgtgttagt
actggaaacatcacacatttaagacgcattttatcagttcttgtctcagctgtaaaggtg
caaaaagggcaaaaagtgtctgattataagcttatgcttgaactcattctattgcttgtg
cggtcatatatcacacctttgggggttaccgagtcacaagacgatacatgcttagttgtt
gataaaattttgaaattaatgttggccactcttgatgggctctgtagttgcaataaatca
atgatatccgagtgtgctacccagtgggctccaatttttaaatcacgaagctcgagtttg
ctacgtttcattgaaaaactgctacagaaggatctctgtttacatgctttcagaaataat
gttataagtgcaataaatgagttattggagatttcagaggaaaaggtcatacagttatta
caatccttctgtgagaaaattcaattggatatacgagactcagactttgtagacggagat
agtagagaagcattagctaggatatgcaatcatttcaaagggactatccgttcttggatt
gaaaaaataaatgatattgcacgttctgatgtttcttgtgaaattgatgaaagaatgtca
ctactatggggagttgtgaactgctattctcatatgactatagttgataccgttccatcc
ttgttggtgaatcttatggatgcagtagatcagcttctgactgttaaagctgtcctcatt
gcagatagctctaaaaaagcatgggaaagccttctaggtgcttcactaagttcttacagc
agattgtacaatgacagtaacctcggagctgatgaaaccaaaaagtttttaagttttgca
aaacaatacaagtcatcttcacacgtgttgttggctgttgctggttatttggaaagcaag
tatggcccttctttagaagacactgggtgtagaatgtatcatccagaacttgaagaaatg
tctgcagaggcagtgacatcattttctggtaatctgtgcgattcagacaaggagcttcgc
atttcaacccttaaaatactttgtcattacaaatctttgggtgaggaaaattcttcagtg
gatcagtcagctgcgaagaaaaggaaaatcgaagtttctccaacttctgttgtggataac
acaggaaataatcctcttctggttctcctgtctattgaaacaactccagtttcaatttct
acaagtagaagtatccaacgattgatttccaagatacagatggacctatcttccggacgg
attactcatgtttatgcacctcttgttttgagtgggttgtttggcatcttgaataaccga
tttagctatctctggaatcctgtattagaatgcatttctgtgttggtaaacctgcatttt
tcacttgtgtgggatacccttatcaattatctggaaaaatgtcaagcaatgagagagacc
tctagcagcttacatgatagtgccaatggtgcatcgtttgatcagccagctggtttacat
ggttgtttcaaattatttgtccatcatgaatctgatagcacgccatcctcaacaatattg
acattattgctgcaagctttacaaaaaattccaactgttatagaatctcgctctcggcaa
ttcattcctctttttttgaagttcttaggatacaacaatcttgatcttgcaagtgtggga
tcgtttgattctcatgcctgtaaaggaaaagagtggaagctcatcttgaaggaatggcta
aacttgttgaaacttatgaaaaatcccaagtcattctacctgagccaatttcttaaggag
gttctgcaaaataggcttattgaagaagacgatcccgaaatacaaataagagttctggat
tgcctattaatctggaaagatgatttctttttaccatataccgagcatctgcgaaacttg
attagttccaaatttacaagggaggaactaacaacatggagtttatccagagaatctaaa
atgattgaagaatgtcaccgagcttatctcgtgccattggttatccgtcttttgatgcca
aaagtaagaaagttgaaaggacttgcatctcgaaagaaagcaagtatttgtcatcggaaa
gctattctgagtttcatagctggacttgatatcactgagctgccacttttctttgcttta
ctgataaagcctttgcaaatagtagagaaaactgatgggcctactaacctgttttggact
ttacctataagttgcagtagtgaatttcaagcatcttctttgttagaatattttactttg
gacaatatcgcaaccttatcctggaaaaagaaatatggcttcttgcatgttatagaagat
attgttggggtttttgatgaattgcatatcagaccatttcttgatttactggtggggtgt
gttgttcgggtgttggagagttgcacatcaagccttgacaatgtaaaactggatggactt
tcttcagatcaacacaattctagcaccaactcaaactctcttggtgaggaaagagtgcca
gaaaatcaaatcctgattggcaatacttcaaatcagctcaaggatatgaggtctctgtgc
ttgaaaattgtttccctggttgtcaataaatatgaggatcatgaatttggttctaatttg
tgggacagattcttttcctcagtgaaaacgttgattgagaaattcaaacaggaggcggct
agtagtgagaaaccaagttcactgctatcttgttttctggccatgagtgcaaatcataaa
ctcgtaccactattatgccgggaagaaagtctcatacctgatatattttccattgtttcc
gtcaattcagcttctgaagctattgtatattgtgttctaaagtttgtcgagaacttgtta
agccttgacaatcagttggattatgaagacagttctgcccatagagttttactttcaaat
attgaagtgcttatggacagcatttgttgtttatttggaagtgataatgcagccaagaga
aagctgatcaaatctcctggggagacagtattaagaattttcaaatttttgcccaagtac
ataaaggaggcagagtttgcaaagcgatttgtggacatactgctgctgtttttggaaaag
aaaacacaagactctgatgtctgtattgaagttttgcaagtcattcaaaatatcataccc
atattgggaaatggaagcactgctaaaattttgagtgctgtttctcctttatatatttcg
gctgagttggatatgcgtttgaggatatgtgatcttcttgatgttcttgtagcatctgat
gcatctgtactctcggtggctgaacttctccgtaagctgaatacaacatctactttgggt
tggcttgatcatggtgttattttgaatgcttacagcatcatcaatattgatttcttcaga
aatgttcaagtggaacatgctttacttgttttatcacactgtgtacttgacatgtcttca
gaagaaacaacttttgtttgtagtgcacagaactcattgctatcttttgttgatttttct
gcactcatcctttcacaacaaggaagcagtgaacaagagttgtctataatgcaaaacact
gatggttgttggacaaaatcaagcatccagcgtattacaaagaaatttcttttgaagcat
atggaagatgccatggatgggccacttgctgttcgaaagggatggatgaagttgttaagt
caaatagcgtcgaagcttccagatgtgttaaaccttaaatcactcgaagttctgtgcaat
gacgatagtgaagcaaatttttttgacaatataagcgactcagtgatcggtaagagagtg
aaggcattgtcgctgtttagaaatgttatcagtacgaacaaattatcagagtttatcact
gaaaaagtgttcatgcgacacttcttcaacatgttgtttgatgagaaagaagtaaaggtt
gaccatatgaaaactgcatgcattgaaactattgcttctgtagctggtcagatgggatgg
aagtcatactatgcactattgaacaaatgttttcagggagcatccaggagtccagacaaa
cagaaactctttatacgtctcatctgtgctattttggataaatttcacttttcagaactt
tctcacactgaagaacctaagaaatctttggtttgtgtttctgacacgggggtaaccaac
gttgtttcttcagttattttaggcaactctggtgcttctgatgtgaacacagatatacaa
acatgcctctataaagttgtgcttcctaagatacaaaagctgatggattctgattcagaa
agggttaatgttaatatcagtcttgctgcattgaaactacttaagttacttccaggggat
gtgatggacacgtatcttccaactatcgttcaccgaatttcaaacttcttaaagagtcat
ctagaaagcattcgtgatgaagctaggtctgcgttggctacttgtttgaaagaacttgga
ttggaatacttgcaattcattgttaaggttttacggtctaccttaaagcgaggatatgaa
cttcatgtcctagggtacacacttaatttcattttgtccaagtgtctttcaagtgcagtt
agtggaaagatagattactgtttgggggatctcctttctgtcatagagaatgacattttt
ggagatgttgctgagcagaaggaagtggaaaagatagcttcaaagatgaaagaaacaaag
aagaaaatgtcatttgaaagcttgaaattggtggcccaaaatgtaacattcaaaagctat
gcactaaagctgcttgcaccagtaactgctcatttgcagaagcatgtcatacaatctgta
aaaggaaaattggaaactatgttgcatagtatagctgctggtattgaaagcaatccatct
gtagatcagactgatctatttgtctttatttatggcattgttgaggatggcttaaaaaat
gaaattggttggcatgagaataagttgataaaatcggaagataaggatagatgtactaat
gctaaaagaattttttcaggccgtgtagtttctagtggcttattatgctctcaccttata
acagtgtttggtttaagaatattgcataaacggatgaagggtttgaagcagggcgtaaaa
gatgaaaatatcttatccttattagatccttttgtcaagctattaagtgatggtttgtgc
tcaaagtatgaggatatattgtctgcttcccttggatgccttactgtactggtgaagttg
cctttaccatcccttcaagcacatgctgagagaataaagtctactgtattggatattgcc
caaagttcagtaaactctagcagtcctttaatgcagtcatgtttgacaatgctgactatg
cttttgaggaacactgaaatttctctcacccaagaccagatacaaatactaattcagctt
ccaatatttctggacattgaaaggaatccatctttgattgcgctatcacttctaaagggt
attgtcaaccgcaagctgcctgtagccgagatatatgacattgttactagggttgctgaa
ttgatggtgacaagtcaaatggaatctattcgtaagaaatgcagtaaaattttgttgcaa
tttttgcttgattatcgactttcagaaaagcgcttgcaacaacatctggatttcctgctc
tcaaatttgaggtatgaacattcgactggacgggaatctgttcttgaaatgattcatgct
attatagtcaaatttccaagaagtgttttggatgagcaatcacagacatttttcatccat
ttggtggcttgcttggcaaatgataatgataatattgttcgttctatgagtggggctgct
ataaagaagctcattggttctgttagtcccaatgcacttgattctattcttaaatatgct
ctttcttggtatttgggtgacaagcagcaactatgggctgctgccgcacaggttttgggg
ttgctgattgaggtaatcaagaatggatttcttaaacatatagactgtgtcttgccggtg
actcgtcgcatcttgcagtcttctatacatgcagtcacaaacaggcaacagggctttgag
tccgaatccatcgttcccctttggaaagaggcatactattctcttgttatgctggagaag
atgattcatcagtttgatgatttatgctttgcaaaggatctggaggatatatgggaaaca
atatgtgagatgttgttgcacccacattcttggttgcgcaacagatcagttcgtctcata
ggtctatactttgaacgtgtaacagatgtcaacagacaaaatcaacaaagctcctttagt
agttattttatgatgagtcctagtagattatatctaatagccacttctctttgctgccaa
ttgaaaatgccactcatagatgatgctgacagcaacctgatgacccagaatattgtcttt
tctatttgtggtgtccattctttaatggggcaaactgcctgcatagacccccctgcattc
tggtctaagcttgagcaacatgagcaggaccggtttctgaaagcttttgacttaatgaat
gcaaaaaaaggaaaaagtatgttcctgtcttcatctcttacctcctccgtatctgaagac
aatagtcaacttaatgttaagaatacccaatatacacttgtctcgttgttgctcaagaaa
attggcaaaattgcccttcaaacagatgctattcagatgggaatagtcttcaacagtttt
gggaaaattatggcacagatacagagcagtaaggaagattgctatgctgatgtggtcctg
ttacctctgtataaagtttctgaagggtttgcgggaaaagtggtagctgataatctcaaa
aagttggcagaagacacatgtggaaaaatagagcatattttgggtactcaaaaatatgtg
gcagtttataaccttataaggaaaaacctcagctccaaaagaaataagaggaaacaggaa
gaaaaggtcatggctgctaccaatccaatgcgaaatgccaaaaggaaattgaaaatgtct
gccaagcatcgtgcctacaaaaagagaaagattacgactttgaaaatggggaaatggggg
cattga
DBGET
integrated database retrieval system
