Trifolium pratense (red clover): 123905594
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Entry
123905594 CDS
T08949
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03440
Homologous recombination
tpra03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
123905594
03450 Non-homologous end-joining
123905594
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tpra03032
]
123905594
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123905594
DNA replication proteins [BR:
tpra03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
123905594
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
123905594
BRCA1-C complex
123905594
NHEJ (non-homologous end-joining)
MRX complex
123905594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_21
AAA_15
SbcC_Walker_B
Rad50_zn_hook
AAA_29
ABC_tran
AAA_13
AAA_16
BcrAD_BadFG
AAA_22
Motif
Other DBs
NCBI-GeneID:
123905594
NCBI-ProteinID:
XP_045811219
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All DBs
Position
LG2:51122112..51136439
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNAR
SGHSFIHDPKVSGETETKGQIKLRFKTAAGRDVVCIRSFQLTQKASKMEYKAIESVLQTI
NPHSGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDAAYTLRESITHDQKKTESLKD
QIQQLGGSIKDLDTKIDHAEKTLKHLRNLKEQINAKTTERSTLFKEQQDKHSALDEEYEE
SDEELMEMKTNFDEKIAIARTQINKLEREKKDISTKSDCLKNTVNESIWEISKLQTEAEA
HMSLKKERDTCIQNIFARYNLGSLPKPPFSAEDALNLTNRVKSRLGDLEKDLDDKKKANN
TELQMAWDCYLSANESWQNTEAKIQTKREIKVDIIKRIEEKKNKLDSFEHQISNINFSQL
DERERDLQIRLERMIKQHEESKFEQKKSQNEIEVHNVEQKIKAVNRELVTMASDSSDREK
LSVLKGGLEKKKKQHKKIIDDQKDKIRRVLKGRIPSDKDLKKEITQSSRAVVAEYDELNA
KYRELDKEVNVLQMKIQEVDNSLSKHHKDMESRKRFIESKLQSLDQHCSGIDSYLKALES
AKEKRDVQKSKYNIADGMRQMFDPFERVARAHHFCPCCERSFSVEEEDSFVKKQRVKAAS
SAEHMKALAVESSSADSDYQQLDKLRMWYEEYVKLGKETIPNAEKELQQGKEELDHKSQA
LDDLLGILAQVKTEKDLVDIVVQHVENADRLFQEIQTLQSDVEDLESRLDCGGLGVRTLE
EIQSELTALQGTKDNLHTEMRKMMDDDSYMKKDILNFTNRLNHATNDKNKAATKLQEVKR
LEEDLEHLTEEMTQVDLDEKSLLEAVGPLCKRKDKLVADYDELKSRLDNEHENLVGKMRI
YQQEAEYVFRMTSKIKEYSELMKGDRLKELQEKKSLSESQLQSCETRMQKIIEELDKKKE
LMRNADPLRRIIEDNINYRKTKAQVDKLLHEIETLEESMLKVGVFDTIEKELQKLSKERE
RLLEESNRCKGTMDVYQSNISKNKIDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDCISIHSDSEGGGTRSYSYKVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAAIL
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDHQHSIIESQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggtcgataagatgctgatcaaaggcatccgtagtttcgaccctgagaacaaa
aacgtcatcaccttcttcaaacccttaaccctaatcgtcggtcccaacggtgccggaaaa
actactatcatagaatgcttgaagctttcatgcactggtgaattgccaccaaatgctagg
tctggccacagcttcattcatgatcctaaggtttccggtgaaacggaaaccaagggacag
attaagctccggtttaaaaccgccgccggtagagacgtggtttgcataaggtcgtttcaa
ctcactcaaaaagcatctaagatggaatacaaagcaattgaaagtgtgcttcaaactatt
aatcctcattcgggcgagaaagtttgccttagctatagatgtgctgacatggatagagag
attcctgcactgatgggtgtttcaaaggccattttggaaaatgttatattcgttcatcaa
gatgaagctaattggccgcttcaggatccttccacgttgaaaaagaagtttgatgatatc
ttttcggcaactcgatacacaaaggcactggaggttataaagaaacttcacaaggatcaa
gctcaagagataaagacttacaagctgaaactggaaaaccttcaaactttgaaagacgcg
gcttatacgcttcgggaaagcataacacatgatcaaaagaaaacagaatctctaaaagat
cagatacagcagttgggtggaagcattaaagatttggacactaaaattgatcatgcggaa
aaaacattgaaacacttgcggaatctaaaggagcaaataaatgctaaaactacagaacga
agcactctttttaaggaacaacaggataaacattccgctcttgatgaggagtatgaagaa
tctgatgaagagttgatggaaatgaagaccaactttgatgaaaagattgcaattgctaga
acacaaataaacaaattggaaagagagaagaaagacattagcacaaaaagtgattgcctt
aagaacacagtcaatgagtccatctgggagatcagcaagctacaaactgaagcagaagct
cacatgtctttgaagaaggaacgagatacttgcattcaaaatatttttgccaggtataac
ttaggttctcttccgaagccacccttcagtgctgaagatgctttgaacctcaccaatcgt
gtaaaatcaaggttgggggatcttgagaaggatcttgacgataaaaagaaagcaaataac
actgaactccagatggcatgggattgctacttgagtgcaaatgaaagttggcaaaatact
gaggctaaaatacaaactaagagagagatcaaggttgatattataaagcgcattgaagag
aagaaaaataagcttgattcatttgaacatcaaatatctaatataaatttttctcagtta
gatgagagagaaagagacttgcaaattcggctggagaggatgatcaagcaacacgaggaa
agcaaatttgaacaaaagaaaagtcaaaatgaaattgaagtccataatgtggagcaaaag
attaaagctgtcaatcgagagttggttaccatggctagtgattcatcggacagagagaaa
ctatctgttttgaagggaggcttggagaagaagaagaagcaacataaaaagataattgat
gaccaaaaagataaaataagaagggtgctaaaagggaggattcctagcgataaggacttg
aagaaggaaataacacaatcatcaagggctgttgtagctgaatatgatgagctgaatgct
aagtatcgggaacttgacaaggaagtaaatgttttgcagatgaaaatacaagaagtagac
aatagtctttctaaacaccacaaggatatggaatcaagaaagagatttattgaatccaag
cttcagtctttggatcagcattgttccggaattgattcttatctcaaagctttagagtct
gccaaggagaagagagatgtacagaaaagcaaatataacattgccgatggtatgcgacaa
atgtttgatcctttcgaaagggttgccagagcccatcatttttgcccttgctgtgagcgt
tctttctcggtagaagaagaagacagttttgtcaagaagcaaagagtgaaggctgctagt
tcagctgaacatatgaaagctctcgctgtggagtcctccagtgcagactctgattatcag
cagttggacaagcttcgtatgtggtacgaagaatatgttaaacttggcaaggagacaatc
cctaatgctgaaaaggaactccagcaagggaaggaggagctggatcacaaatcccaggca
cttgatgatcttttaggtattttagctcaagtaaagaccgagaaggatttggttgacata
gtggtgcagcatgttgaaaatgctgatcgacttttccaagaaattcaaactttgcagtca
gatgttgaggatttagaaagtaggcttgattgtggaggactaggtgtaaggactctagaa
gaaattcaatctgagctcactgcattgcagggaacaaaggacaatttgcataccgagatg
aggaaaatgatggatgacgacagctatatgaagaaggatatattaaatttcacgaaccgg
ttgaaccatgcaacgaatgataaaaataaagcagctaccaaattgcaagaagttaaaaga
ttagaagaagatttggaacacttaactgaagaaatgacccaagttgatcttgatgagaag
agtctgctagaagctgttggacctttatgcaagcgcaaggataaattagttgctgattat
gatgaactaaaaagtagacttgacaacgagcatgagaatttggttggtaaaatgagaatt
tatcagcaagaagccgaatatgtttttagaatgacttctaagatcaaagagtactctgaa
ttaatgaaaggagacaggttgaaggagctgcaggaaaagaaatctctgtcagaatctcaa
ctgcaaagttgtgaaaccaggatgcagaaaattatagaagaactagacaaaaagaaagaa
ttgatgagaaatgctgatccgcttagaagaataattgaagacaacataaattacagaaaa
acaaaggctcaagttgataagctattacatgaaattgaaacacttgaagaaagtatgttg
aaggttggtgtatttgacacaattgaaaaggaactccagaaattatccaaggagagggag
aggcttcttgaggagtcaaacaggtgcaaaggaacaatggatgtttaccagagcaatatt
tccaaaaataagattgatcttaagcaggcccaatacaaagacatagataagcgatacttt
gaccagcttatccagcttaagacaactgaaatggcaaacaaggacttggacagatactac
aatgcacttgacaaagcactgatgcgtttccacaccatgaaaatggaagaaatcaacaaa
attataagggagttgtggcaacagacttatagaggacaagatattgactgcattagtatt
cattctgattctgaaggtggtggcacccgttcctacagttataaggttctcatgcagact
ggtgatgctgaattggaaatgagaggaagatgtagtgcaggtcagaaggtactggcatct
cttatcatacggttggctttagctgaaacgttttgcctcaattgtggaattcttgcattg
gatgaaccaacaacaaatttggatggaccaaatgctgaaagtctggctgctgctatccta
aggatcatggaggacaggaaaggccaggaaaattttcagctgattgtaattactcatgat
gagcgttttgctcaactgattggtcagcgccagcatgcagagagatattatcgagtcgca
aaagatgatcatcagcacagtataatcgaatcacaggagatatttgactga
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integrated database retrieval system
