Trifolium pratense (red clover): 123905746
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Entry
123905746 CDS
T08949
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123905746
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123905746
Spliceosome [BR:
tpra03041
]
Complex B
Other components
Prp19-related factors
123905746
Complex C
123905746
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
zf-CCCH
zf-CCCH_3
RRM_YTH1
zf-CCCH_4
RRM_3
RRM_occluded
zf-CCCH_PARP12
zf-CCCH_10
Motif
Other DBs
NCBI-GeneID:
123905746
NCBI-ProteinID:
XP_045811415
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All DBs
Position
LG2:8458626..8464201
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AA seq
487 aa
AA seq
DB search
MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGR
DARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSNDAIPKSDVNREYFAE
EHDRKARAGIDYESSFGKARPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYR
HEMPVTGELSQQNIKDRYYGVNDPVAMKLLGKAGEMTSLEVPEDESIKTLYVGGLDARVT
EQDLRDNFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQTAKPESDGSDQARQQASVAHSGLLPRAVISQQQNQDQTQGGMLYYNNPPSQQERSYYP
SMDPQRMGALIPSQDGAPGGPSGSGENKPGSEKQQMQHYGHPMMPPPHGQYQHQYYPPYG
GYMHPVPPYQQYPPPPYNAPMPPPQPHVANHPYQHSMQPGSSQTGSGQVGSAPAETGTST
SGGSQQQ
NT seq
1464 nt
NT seq
+upstream
nt +downstream
nt
atggcgcataggttgctcagagaccacgaagccgacggttgggagcgttctgacttcccc
atcatctgcgaatcatgcctcggtgacagcccctatgttcgaatgacgagggctgagtat
gacaaagagtgcaagatttgtacaaggccatttactgtttttagatggaggcctggtcgt
gatgcaagatataagaaaagtgagatctgccagacatgtagtaaattgaaaaatgtttgt
caagtatgccttctggatcttgaatatggacttccagtccaagtccgcgacacagctctc
agtatcagttctaatgatgccattccaaagagtgatgttaatagggagtattttgctgaa
gagcatgatcgcaaggctagagctggtatagattatgagtcctcgtttggtaaagcacgc
ccaaatgacactatcttgaagcttcaaaggacaacaccttattacaaaagaaatcgggct
catatttgcagtttctacataaggggtgagtgtactagaggagctgagtgcccttacaga
cacgagatgccagtaaccggggaactgtctcaacaaaatatcaaagatcgttattatggg
gttaatgacccagttgctatgaagctacttggcaaagctggagaaatgacatctctggag
gttcctgaggatgagagcattaaaactctttatgttggtggacttgatgctagggtcact
gagcaggacttgcgggacaacttctatgcccatggagaaattgagtctgtcaaaatggtt
cttcaacgggcttgtgcttttgtaacctatacaaccagagaaggtgcagaaaaggcagca
gaagaactctcaaacaaattggttattaagggccttaggctaaagctgatgtggggcagg
cctcagacagcaaaacctgagtctgatggctctgatcaagcaaggcaacaggcctctgtg
gctcatagtgggttgttgcctcgtgcagttatatcacagcagcagaaccaggaccaaacc
caaggaggaatgctttactataacaatccaccttctcagcaggaaaggagctattaccct
tcgatggatccccaaagaatgggtgctcttattccatctcaagacggtgctcctggcgga
ccttctggatctggggagaacaaacccggttctgaaaagcagcaaatgcaacattatggc
catcctatgatgccacctccacatggccaatatcagcatcagtactatcctccatatggt
ggttacatgcatccagttcccccttatcaacagtacccaccaccaccatacaatgctcca
atgcctccaccccagccacatgttgcaaatcacccctatcaacattctatgcaaccaggg
tcttcacaaacagggtctggacaagttgggtctgcaccggctgaaactggaacatctaca
tcaggagggtcacaacaacaatga
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