Trifolium pratense (red clover): 123905810
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Entry
123905810 CDS
T08949
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03022
Basal transcription factors
tpra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
123905810
09124 Replication and repair
03420 Nucleotide excision repair
123905810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tpra03021
]
123905810
03036 Chromosome and associated proteins [BR:
tpra03036
]
123905810
03400 DNA repair and recombination proteins [BR:
tpra03400
]
123905810
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
123905810
Transcription machinery [BR:
tpra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
123905810
Chromosome and associated proteins [BR:
tpra03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
123905810
DNA repair and recombination proteins [BR:
tpra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
123905810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SNF2-rel_dom
NAMPT_N
ARCH_RTEL1
AAA_11
Motif
Other DBs
NCBI-GeneID:
123905810
NCBI-ProteinID:
XP_045811500
LinkDB
All DBs
Position
LG2:complement(9520714..9527291)
Genome browser
AA seq
759 aa
AA seq
DB search
MKFTIEEVTVYFPYDNIYPEQYAYMIELKRTLDAKGHCLLEMPTGTGKTIALLSLITSYT
LSKPQSPIKLIYCTRTVHEMEKTLAELRLLHDYMVKCIGPAAKMLALGLSSRKNLCVNQR
VLAAENRDSVDAGCRKLTASWVRALAAENPDVPSCEFFEQFERAGSGAVLPPGVYTLQDL
RTFGKEKGWCPYFLARHMVEFANVVVYSYQYLLDPKVAAIISKEMQKESVVVFDEAHNID
NVCIEALSVSVRRQTVDGARRNINRMRQEIDKFKATDASRLRAEYNRLVEGLALRGDLPA
ADGWLGNPALPDDILKEAVPGNIRKAEHFIQVLRRLVQYLEGRLETENVEKENPVSFVFS
ILNQAGIDQKTLKFCYDRLHSLMMTLAITDTDEFLHIQTICDFATLVGTYARGFSIIIEP
FDERMPHIPDPVLQLCCHDASLAIKPVFERFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMASVVPDGIVCFFV
SYSYMDGIVNSWNENGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAIFFSVA
RGKVAEGIDFDRHYGRLVIMFGVPFQYTLSKILLARLEYLRETFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDANLNLSTDMALHIAREF
LRKMAQPYDKTGGTGRKTLLSQEDLEKIVFEGSMNDMLY
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttacaattgaagaagtaacggtgtatttcccatatgataatatctacccagaa
caatatgcatacatgattgagttaaaacgaaccctagatgcaaaaggacattgtttactc
gaaatgccgactggaacaggaaaaacaattgctttactttcactcattacaagctacaca
ctttcaaagcctcaatcaccaattaagcttatttattgtactcgaacggttcacgagatg
gaaaagacgctcgctgagctgagacttcttcatgattatatggttaagtgtattggtcct
gctgctaagatgcttgcacttggattgtcttcgaggaagaatctttgtgttaatcagcgt
gttcttgcggctgagaatcgtgattcggttgatgctgggtgtaggaaattgactgctagt
tgggttagggcgcttgctgcggagaatccagatgttcctagttgtgagttttttgagcag
tttgaaagggccggctctggtgctgttttgcctcctggtgtttatactttgcaggatctg
agaacatttgggaaggagaaaggttggtgtccttactttttagcgcgacatatggttgag
tttgccaacgtcgtagtgtatagttatcaatatttgcttgatccaaaggtggctgctata
atatccaaggaaatgcagaaagaatcggttgttgtatttgatgaagctcataatattgat
aatgtttgtatcgaagcacttagtgtgagtgtgaggaggcaaactgttgatggtgctaga
agaaatataaatagaatgcgtcaagaaattgacaagttcaaggccacagatgctagtaga
ctccgtgctgaatacaacaggcttgtcgaagggttggctcttagaggagatcttcctgct
gccgatggttggcttggaaatccagccttgcctgatgatatactaaaagaggctgtacct
ggaaatattcgtaaggctgaacacttcatccaggtcttgcgtagattagttcaatatctt
gaagggcgtttggaaactgagaacgtggagaaggaaaaccctgttagctttgttttctca
attcttaaccaagctggaattgaccaaaaaacattgaagttctgttatgaccgccttcat
tcattaatgatgacattggcgattacagacaccgatgagttccttcatatccaaacaata
tgtgattttgccacacttgtcggcacatatgctcgtggtttttccattatcatagaacct
tttgatgagagaatgcctcatattccggatcctgtattgcagctttgttgccatgatgct
tcccttgccattaaacctgtttttgagcgatttcagtcggttgtgattacatctggcaca
ttaagccccatagatttgtaccctcgtcttttaaattttcaccctgtcgtcagtcgaagt
tttacaatgtccttaacaagagattgcatatgccctatggttcttacccgtggcagtgat
cagctcccagtcagtaccaaatttgatatgagaagtgatcttggcgttgtaaggaattat
ggaaggctcttattggagatggcatcagttgttccagacgggattgtatgtttcttcgtc
agttactcgtatatggacggtatagtcaatagctggaatgaaaatggaattttgaaggaa
ataatgcagcataagcttgtctttattgagactcaggatgtggtagaaactacattggct
ctcgacaactatcgtaaggcttgtgattgtggaagaggtgctatattcttttcagttgca
agaggaaaggttgcggaaggtatagattttgatcgacattatggccgtctggtaatcatg
tttggtgttccttttcagtacacattaagcaagattttgcttgcacgcctggaatatcta
cgggaaacttttcaaattaaggaaggagattttctaacgtttgatgccttgagacaagct
gcacagtgtgtgggccgtgtaatccgttcaaaagctgattatgggatgatgatttttgca
gacaaaaggtatagtcgtcatgacaaacgttccaaattacccggttggatactttctcat
ttacgtgacgccaacctgaacttgagcactgacatggctttgcatatagcacgcgagttc
ctcaggaaaatggcccagccatatgataagaccggtggcaccggccggaaaaccttattg
tctcaagaagacttggagaagatagtttttgagggcagcatgaatgatatgttatactga
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integrated database retrieval system
