KEGG   Trifolium pratense (red clover): 123905920
Entry
123905920         CDS       T08949                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1-like isoform X1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    123905920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tpra03021]
    123905920
Enzymes [BR:tpra01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     123905920
Transcription machinery [BR:tpra03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     123905920
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 123905920
NCBI-ProteinID: XP_045811680
LinkDB
Position
LG2:46955159..46974404
AA seq 1998 aa
MEDNPTSSLLEGKVVGIRFSMATRQEISTASISDSQISHASQLANPFLGLPLEFGRCESC
GTSEAGKCEGHFGYIELPVPIYHPSHVTEVKRILSLVCLSCLKLKKTKVPSSSSGLAQRL
LSPCCEDVNASQVSIREVKTADGACYLALKVPKSKMHDGFWSFLEKYGYRYGGDHTRALL
PCEAMEIIKRIPPETKKKLAAKGYFPQDGYVLKYLPVPPNCLSVPVVSDGVSIMSSDPAM
TILRKLLRKVEVIRSSRSGEPNFESHQVEANDLQSVVDQYLQIRGTSKAARDIETHYGVN
KELNDSSTKAWLEKMRTLFIRKGSGFSSRNVITGDGYKKINEVGIPLEVAQRITFEERVS
IHNIHYLQKLVDENLCLTYKEGLSTYSLREGSKGHTYLKTGQIVHRRIMDGDTVFINRPP
TTHKHSLQALVVYIHDDHTVKINPLICGPLGADFDGDCVHLFYPQSLAAKAEVLELFSVE
KQLLSSHSGNLNLQLSSDSLLSLKMLVKSCFLDRATANQMAMFLSLPLPMPALLKDTSGD
SFWTSIQMLQCALPFSFDCTGVRYLIRQREILEFDFTKDVLPSIINEIAASIFFGKGPQE
ALNFFDVIQPFLMENIFAHGFSVGLQDFSISRAVKRVINRSIGKVSPLLRQLRDIYEERV
AQQLENEIQDIELPVINFALKSTKLGDLIDSNSKSAVDKVVQQIGFLGQQLFERGKFYSK
GLVEDVASHFHVKCFYKMEDYPSAEFGLLKGCFFHGLDPYEELVHSIATREIIDRSSRGL
SEPGTLFKNLMAILRDVVICYDGTVRNVCSNSIIQFEYGVQSGDAAQHLFPAGEPVGVLA
ATSMSNPAYKAVLDASPSSNSSWGFMKEILLCKVNFRNESNDRRVILYLNDCDCGRNYCR
ERAAYLVKNQLTKVSLKDAAVDFIVEYQQHRRHNDGTEDAGLVGHIHLNEVMLENHKINM
TEVYQKCLERLDSFSRKKKYPIFKRTELSFSESCYSPNYAAPCVTFLWRDGDDLDQTTKV
YADIICPVLLESIIQGDPRISSASIISVNPGTNTWVRNPSKSSNGELALDVILEKEAVKQ
SGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGISCTFDQAIQRLAASVRMVAKGV
LREHLILLASSMTCGGNLVGFNTGGYKTLARQLNIQVPFTDATLFTPRKCFERAAEKHHA
DSLSSIVASCSWGKHVAVGTGSRFDIVWDPKEINTNEIEGMNVYNFLHMVKGLANGEEEN
NACLGEDIDDLLDDENVDWDMSPQHTSGFDAVFDETFELPSGPTSNGWDSNTDQIDQTKT
NSNDWSGWGQKKSEIQDSSKSSGWGTATNQNTESSWGKSKQGGEDDAVQNTQWESGIQED
SSKFSAWGAATNQNNDQSWGKMKPVAQDAVQTTQWESGIQEDSSKSSACGAASNQNSDQS
GSSQKWRSGVAQEDSSKSGAWEANTIQNSGQASWGKNKTAVLDAGEERAHKESGSITKWK
ADGIQEDLSSSGGWKAWGKSKTNVHEGESIKVQEDSWNSQKSKAGADVTQEDSAKSSAWG
AIKDATKSKSNDWSSWGGKKDEIHDIAEFSSRSGALEHKPDNVKDSWDAKLPVANNSSWG
KPKSSENQPWDNKNESNSSWGKPISQENQPWDSKTEPNSCSWGKPKSQENQPWDSKTEPN
SSSWGKPKSQENQPWDSKTEPNSSSWVKPKSQENQAWDSKTEPNSSSWGKPNSQENQPWT
KNDSNQSASSRGWDSHVASANSDGDRSFQWGKQGRDSFKKNQFEGSQGRGSNAGDWRNQN
RPARVPGQRFELYSSEEQDVLKHIEPIVQSIRKIMQQEGYNDGDPLAADDQKYVLENVFE
HHPDKETKMGAGIDHVMVSRHSNFQDSRCLYVVLKDGKKEDFSYRKCLENLVRKKFPETA
ESFCGKYFRKPRPREKREQTPNPAGEQTANPNPAGEQTATPNPIGEQTSNPNPAGDQTST
PNPVEDQNTTPMAMETNE
NT seq 5997 nt   +upstreamnt  +downstreamnt
atggaagataatcctacttcaagtcttttggaagggaaggttgttgggatccgattcagt
atggctacacgccaggaaattagtactgcatcaatcagcgattcccaaattagccatgct
agtcagctggcaaatccctttcttgggcttccacttgagttcggaagatgtgaatcttgt
ggcacttccgaagctggcaaatgcgaaggccactttggttatattgaacttccagtgcca
atataccatcctagtcatgtaaccgaggtgaagcgaatactgagcctagtctgcttaagc
tgcctaaaactgaagaaaacaaaggtaccttcttcaagcagtggtttggcacagagatta
ttatctccttgttgtgaggatgttaatgcttcacaagtttctattcgggaggtcaaaaca
gctgatggggcttgttacttagcactgaaggtgccaaagtcaaagatgcatgatggattt
tggagttttttagaaaaatatggctatcgctatgggggtgatcatactcgagctttgctt
ccttgtgaggcgatggaaattattaagagaattcctccagaaacaaaaaaaaaacttgct
gcaaaaggatattttcctcaagatggatatgttttgaaataccttccggtaccaccaaat
tgcttgtctgtgccagtagtttcggatggtgtcagtatcatgtcttcggatcctgccatg
acaattcttagaaaattgcttaggaaggttgaagtcatcagaagctctagatctggtgag
ccaaactttgagtctcatcaagtggaagctaacgatttgcaatccgtggttgatcagtat
cttcaaattaggggtacttctaaggccgcacgtgatatagaaacacattatggggtcaat
aaggagctgaatgattcctcaacaaaagcatggttagagaaaatgaggactttatttata
agaaagggttcagggttttcttcccggaatgtaataactggagatggctataagaaaata
aatgaagtaggaataccgcttgaggttgcccaaaggataacatttgaggagagagtaagc
atccataacatccattatttacaaaagttggttgatgaaaatttgtgcttgacatacaag
gaaggtttgtcaacttactcgcttagggagggctcaaaggggcacacttaccttaaaaca
ggtcaaatcgtccataggaggattatggatggcgatacggtcttcatcaacagacctcca
actacccataagcactccttgcaagcgcttgtggtgtacatccacgacgaccacacagtc
aaaattaatccacttatatgtggacccctcggagcggactttgatggtgactgtgtccat
cttttttatccccagtcacttgctgctaaagctgaggttttggagcttttctctgttgag
aaacaacttctcagctctcacagtggcaatttgaaccttcagttatcctctgattcgtta
ctgtcactgaagatgctagtcaagagttgttttttggatagagcaacagctaatcaaatg
gcaatgtttctttcactgcctttgccaatgcctgctttgcttaaggatacatctggtgat
tctttttggacatctattcaaatgttgcagtgtgctttgcctttctcgtttgattgtact
ggagtacgatacttgattaggcagagggaaatcttagaatttgattttaccaaagatgtc
ttgccttcaattataaatgaaatagcagcctcaattttttttggcaagggtcctcaggag
gcactcaatttctttgacgtgatccagccctttctgatggaaaacatatttgcccatgga
tttagtgttggattacaagacttttctatatccagggcagtgaagagagttataaataga
agcattgggaaagtttctcctttgttgcgtcagctgagggacatatatgaagagcgcgtg
gctcaacaactggagaatgaaattcaagatattgaacttccagtcataaattttgctttg
aagtcaaccaaacttggagatttgattgactcaaatagtaagtctgcggttgacaaggtg
gttcaacagattggctttttaggccaacaactctttgagagaggaaaattttattccaag
ggattggttgaggatgtagcttcccattttcatgtgaagtgtttctataaaatggaagat
tatccctctgccgagtttggtttgctcaaaggatgcttttttcatggtttagatccatat
gaagagttggtgcattcaattgcaacgagagaaataattgaccgctcttctagaggatta
tctgaaccaggcacattatttaagaacttgatggccattctccgcgatgttgttatttgc
tatgatggaaccgtgagaaatgtgtgtagtaattccatcatccagtttgaatatggcgta
caatctggagatgcagcacaacacttattccctgctggtgagcctgtaggtgtcttagct
gcaacttccatgtcaaaccctgcttataaagcagtccttgatgctagtcctagcagtaat
tcttcctggggatttatgaaggaaatactcctttgcaaggtgaacttcaggaatgaatca
aatgatcgccgtgtaattttatatttaaatgattgtgattgcggtaggaattattgtcga
gaacgtgctgcatatttggttaaaaatcaattaaccaaagtaagcctcaaggatgcagca
gtagatttcattgttgaataccagcagcatcgaagacacaatgatggtactgaagatgca
ggccttgttggtcatattcatctaaatgaggtgatgttagagaaccataagatcaatatg
actgaagtttaccaaaaatgccttgagagacttgattcctttagtcggaagaagaaatac
ccaatttttaagagaaccgaattgtctttcagtgagtcatgctattctccgaactatgct
gccccttgtgtaacattcctttggcgggatggtgatgatttggaccaaaccactaaagtc
tatgctgacatcatctgcccagttctgttagaatccataatccaaggagaccctcgtatc
agctcggcaagtataatttcggttaatcctggaacaaacacatgggtccgtaacccgtcc
aaatcttctaatggtgaattagcactggacgtcattcttgagaaggaagctgttaaacaa
agtggtgatgcttggaggattgtactcgattcctgtcttcctgttcttcatttgattgat
actaggcgttctataccttatgctattaagcaaattcaggaattactgggaatatcatgt
acttttgatcaagcgattcagcgtcttgcagcatcagtaagaatggtggcaaaaggtgtt
ctcagagagcatctcattctcttagcaagtagtatgacttgtggtggaaatttggttggt
tttaatacaggtggttataaaaccctggctcgtcaattaaatattcaagtacccttcacc
gatgcaacactctttactcctagaaaatgctttgaaagagctgctgagaaacaccacgca
gactctttgtcaagcattgttgcttcctgttcttggggcaaacacgtggctgttggtaca
ggatcaagatttgatattgtatgggatcccaaagagattaacacaaacgaaattgaaggg
atgaatgtttacaattttcttcacatggtcaaaggccttgccaatggggaagaagaaaac
aatgcttgtttgggtgaggacattgatgatttgctcgatgatgaaaatgtggactgggat
atgtccccacagcatacctctggatttgatgctgtctttgatgagacttttgaactaccg
agtggcccaacatcaaatggttgggattcaaatacagaccagattgatcaaaccaaaaca
aactcgaatgattggtctggttggggacaaaaaaaatctgaaatacaagactcttcaaag
tctagtggctgggggactgccaccaatcaaaataccgagtcttcctggggtaaaagtaaa
cagggaggtgaagatgatgcagtacaaaacacccaatgggagtccgggattcaagaagac
tcttcaaagtttagtgcttggggggctgccaccaatcaaaataatgatcagtcttggggt
aaaatgaaacctgtagcacaagatgcagtacaaaccacccaatgggagtccgggattcaa
gaagactcttcaaagtctagtgcttgtggggctgcttcaaatcaaaacagtgaccagtct
gggagctctcaaaagtggagatctggtgttgcccaagaagactcttcaaaatctggtgct
tgggaggccaacacaattcaaaacagtggtcaggcctcttggggcaaaaataaaactgca
gtcctagatgctggagaggaaagggcccacaaagagtctgggagcattacaaaatggaaa
gcagatggtatccaagaagacttgtcaagctcaggtggttggaaagcttggggaaaaagt
aaaaccaatgtacatgagggtgagtctataaaagtacaagaagattcttggaactcccag
aaatcgaaagctggagctgatgttacccaagaagattctgcgaagtctagtgcttggggt
gcgatcaaagatgcaacaaaatccaagtcgaatgattggtcctcgtggggagggaaaaaa
gatgagatacatgatattgcggaattctcttctagatccggtgccttagaacataagccg
gacaacgttaaggacagctgggatgccaaattgccagttgccaataatagctcttgggga
aaacccaaatcatcagaaaaccaaccttgggataacaagaatgaatcaaatagctcttgg
ggaaaacccatatcacaagaaaaccagccatgggattccaaaactgagccaaatagttgc
tcttggggaaaacccaaatcacaagaaaaccagccttgggattccaaaactgagccaaat
agtagctcttggggaaaacccaaatcacaagaaaaccagccttgggattccaaaaccgag
ccaaatagtagctcttgggtaaaacccaaatcacaagaaaaccaggcttgggattccaaa
accgagccaaatagtagctcttggggaaaacccaattcacaagaaaaccaaccttggacc
aagaatgactcgaatcaaagtgcaagttcacgtggatgggactcacatgttgcttctgct
aactctgatggcgaccgaagttttcagtggggaaaacaaggaagagactcatttaagaaa
aatcagtttgaaggttcccaaggtcggggttcaaatgctggggactggagaaatcagaat
cgccctgccagagtacctggacagaggttcgaattatactcttctgaggagcaggatgtt
ctcaagcatattgaacctattgtgcagtccatcagaaaaatcatgcagcaagaaggatac
aatgatggggatccactagctgctgatgaccaaaagtatgttcttgagaatgtctttgaa
catcatccagataaagaaacaaaaatgggtgctggaattgatcatgtcatggttagcaga
cacagcaattttcaggacagcagatgcttgtatgtggttttaaaagatggtaaaaaagaa
gacttttcgtaccgcaagtgcctggaaaacttagtgaggaagaaatttccagaaactgct
gaatcgttctgcggaaaatattttaggaaaccccgaccccgtgaaaagagggagcagact
ccaaatccagcaggggaacagactgcaaatccaaacccagcaggggagcagactgcaact
ccaaacccaataggggagcagacctctaacccgaatccagcaggggatcagacttcaaca
ccaaatccagtggaggaccagaacacaactccaatggctatggaaaccaatgagtag

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