Trifolium pratense (red clover): 123906014
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Entry
123906014 CDS
T08949
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra04120
Ubiquitin mediated proteolysis
tpra04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
123906014
04120 Ubiquitin mediated proteolysis
123906014
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tpra04121
]
123906014
Enzymes [BR:
tpra01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
123906014
Ubiquitin system [BR:
tpra04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
123906014
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
zf-RING_5
zf-RING_11
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
123906014
NCBI-ProteinID:
XP_045811795
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Position
LG2:complement(42497155..42502221)
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AA seq
519 aa
AA seq
DB search
MMRLKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCVLWQL
TKKVFLGNLREAEVERLNEQSWREVMEILFAITIFRQDFSVTFLAMVTALLLIKALHWLA
QKRVEYIETTPTVTTLSHIRIVSFMGFLLLLDSIFLYSSLKHLIETWQASVSLFFAFEYM
ILATTTVSIFVKYVFYVSDMLMEGQWEKKPVFTFYLELVRDLLHLSMYLCFFCVIFVNYG
IPLHLIRELYETFRNFKVRIADYIRYRKITSNMNDRFPDATPEELIASDATCIICREEMT
TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTTVAGGQQGSQSDGQRQGTGT
GSTGQTEVGSGVATDSLSRHQARLQAAAAAASIYEKSYVYPSATSFVRPPGEASSQQAQK
QFHIPGGPANVPFPPMGHFHLIPSQAHVTHLNYGEGFGNDPNIQSLQLELNKKLLQQQIE
ILQNHLQNLQFTEAERSVDDGTSSSESRGKLSTSADIQD
NT seq
1560 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggctgaagacatatgctggtcttagtttgattgcaactttggctattacatat
catgcatttaacagtcgaggccagttttatccggcaatggtgtatctttcaacatccaag
atcagtttggtgcttcttctcaacatgggtttggttattatgtgtgttctgtggcaacta
acgaagaaggtattcttgggtaatcttcgagaagcagaggttgagaggcttaatgagcaa
tcatggagggaggttatggagattctctttgcgattactatctttaggcaggatttctcg
gttactttcctagcgatggttacggcactgttgttaattaaggctttgcattggttggct
caaaagagagtcgagtacattgagacaactcctacagtgaccacgctgtcccatattcgg
attgtgtcgtttatgggtttccttcttcttctcgatagcattttcttatatagttctctg
aagcatttgatagaaacatggcaggcttctgtttcgctgttctttgcttttgagtacatg
atattggcaacaacaacagtgtcaatttttgtaaaatatgttttctatgtcagcgacatg
cttatggagggacagtgggaaaagaaaccagtcttcacattttacctggaacttgttagg
gacttgctacacttgtccatgtatctgtgcttcttctgtgttatttttgtaaactacggc
attcccttgcacctaatacgggagctgtacgagacatttaggaacttcaaagttcgcatt
gcagattacattagatatcgtaagatcacttcaaatatgaatgatcgctttccagatgca
acccctgaagagctcattgctagtgatgcaacttgcattatctgtcgtgaagagatgact
acagccaagaaactgatatgtggacatctttttcatgtccattgcctccgatcatggctg
gaacgacagcatacttgccctacctgcagagccttggttgtaccaccagaaaatggaaca
actgttgctggagggcagcaaggatcacaatcagatggtcaacggcagggaacaggcact
ggaagcacaggtcaaactgaggttggcagtggggtggcaactgatagtttaagtcggcat
caagctagactccaagcagcagctgctgcagcttcaatatatgagaagtcttatgtttat
ccctctgcaacttcctttgtacgacctcctggagaagcttccagtcaacaagcccagaag
cagtttcatattcctggtgggccagcaaatgtaccctttcctccaatggggcacttccat
ttaattccttcccaagcacatgtgacccatttgaattatggagaggggtttggaaatgat
ccaaatatccaaagcttgcagttggaacttaacaaaaaattactgcaacagcagattgag
attctgcaaaatcatctacagaatctgcagttcacggaggctgagagaagtgtagatgac
gggacatcatcatcagaaagcagaggcaagcttagcacttctgcggatattcaagattga
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