KEGG   Trifolium pratense (red clover): 123906022
Entry
123906022         CDS       T08949                                 
Name
(RefSeq) DNA-directed RNA polymerases II and IV subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
tpra  Trifolium pratense (red clover)
Pathway
tpra03020  RNA polymerase
tpra03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:tpra00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    123906022
  09124 Replication and repair
   03420 Nucleotide excision repair
    123906022
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tpra03021]
    123906022
   03400 DNA repair and recombination proteins [BR:tpra03400]
    123906022
Transcription machinery [BR:tpra03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     123906022
  RNA polymerase III system
   RNA polymerase III
     123906022
  RNA polymerase I system
   RNA polymerase I
     123906022
DNA repair and recombination proteins [BR:tpra03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      123906022
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N DUF3557 NA-iREase1
Other DBs
NCBI-GeneID: 123906022
NCBI-ProteinID: XP_045811805
LinkDB
Position
LG2:74039349..74042408
AA seq 206 aa
MVFSEEEITKLYRIRKTVMQMLKDRNYLVGDFELNMTKHEFKDKYGENMKREDLVINKTK
KDKPSDQIYVFFPEEAKVGVKTMKTYTNRMNSENVFRAILVCQTSLTPFARTCVSEIASK
FHLEVFQEAELLVNIKEHVLVPEHQVLNDTEKKTLLERYTVKETQLPRIQVTDPVARYYG
LKRGQVVKIIRPSETAGRYVTYRFVV
NT seq 621 nt   +upstreamnt  +downstreamnt
atggtgttttcagaggaagaaataacaaagctatataggatccgtaaaacggtgatgcag
atgcttaaagacagaaattaccttgtcggagattttgagcttaacatgaccaaacacgag
ttcaaagacaagtacggtgagaacatgaaaagagaagatcttgttattaacaaaaccaaa
aaagacaaaccttccgaccagatctatgtcttcttccccgaggaagccaaggtcggcgtt
aagacaatgaaaacttataccaatcgtatgaattctgagaatgttttcagagctattctc
gtttgtcaaactagtcttactccatttgcgcgaacctgtgtctctgaaattgcatccaaa
tttcacctggaagtgtttcaggaggcggagctgttggttaacataaaagagcatgtgctt
gtgccggaacatcaggtgctcaatgatactgagaagaaaaccttacttgagagatacact
gttaaggaaactcagttacctagaatccaggtaacagatcctgttgcaagatattatggc
ctgaagcgtggacaagttgttaagataatccgaccaagtgagacagcaggaagatatgtt
acataccgatttgttgtataa

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