Trifolium pratense (red clover): 123906038
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Entry
123906038 CDS
T08949
Name
(RefSeq) branchpoint-bridging protein isoform X1
KO
K13095
splicing factor 1
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123906038
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123906038
Spliceosome [BR:
tpra03041
]
Complex A
Other components
Complex A specific factors
123906038
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
KH-I_KHDC4-BBP
KH_1
SF1-HH
Motif
Other DBs
NCBI-GeneID:
123906038
NCBI-ProteinID:
XP_045811828
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Position
LG2:complement(50576247..50581861)
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AA seq
763 aa
AA seq
DB search
MTAKFDWTPASEPHKMSGATSTAPSSSQKLSKFGAKSGFVIPKNKLLGSLVPILRGAKKD
GVTGVINEESPKQIERKSRWGPDPTQDASVKRAKVLALQIRVDQISKQLESENLEIGGAQ
NSSLVDENPDESKSGSQTNSKKSEMLELEKREAIGEILKLDPSYKPPPGFKLLLKEDSLP
LPVHEYPGYKFVSLIYGPEGDNQKRLEKETGTKIKIHGTKADTEEKGEIKPGTDVQCSYK
EMHVKISADSFDKVDAAISIIELLISSVTGNSAADSTSVSVSGDNTNVPNQNQDALPSHA
ISLSQENQDVFQSAANTQMQGDRFQYSGSWFSAVHTPLFASSGSVVPPNPPHLARNPHFP
PQRMSPSSMISAFGAQPAPVAGFHPIIPNQQFSMQAPPPTQIFQHSQWTQTTPFGHVGPP
RNPSVIPAQNLTAPTNASISFPASFSQSQPTPTGQLQTLTPHGVSSELSGGPVNVKISVG
LSNMGSMAPQAVPPKRLVSLGPQPDVPQPNMSVMPRPGSIHPHHAGMSPRPSSSVGPIPG
TVHSTGNHLSGPRMPNSASHYTHVKPLASMPSNSGNFTFQGQRPNADYYQAVPRPNNQAT
TQGGSQEPPSGPRPPPFGFSVPDQPLQSFQRTQVPNQVDPTQAYVSAAPFGGRPGSVSIP
PRHPAFPYAGQPSPRSQVPQMGMRNFIPSPQMPNLLSPGAQRGMHNRQSYPAQGTWPDIP
MSQKFGNNPSLASNRPAYSADQIYDPFSPTSVAPPHQKGNPGK
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgactgcaaagtttgattggacacctgcttccgagcctcacaagatgtctggagctaca
tccacagcaccttctagtagccaaaagctgtctaaatttggtgccaaatctggatttgtc
atccccaaaaacaagttattaggatcgttggtccccattttacgaggggctaaaaaggat
ggggtcactggagtaatcaatgaagaaagtccaaaacaaattgagaggaaatcgagatgg
gggcctgatccaacacaggatgcatctgtcaagagggcaaaggttttggctttgcagatt
cgagtggaccaaatttcaaagcagttggaatcagaaaatctagaaattgggggagctcaa
aactcatcattggtggatgagaacccagatgaaagcaagtctggctctcaaactaatagc
aagaagtcagaaatgctcgaactcgaaaaacgggaagcaataggtgaaatactaaaattg
gatcccagttacaagcctccacctggttttaaactgttgttaaaagaagacagtcttcct
ttgcctgttcacgaatatcctgggtacaaatttgtcagtctaatatatgggcctgaaggt
gataatcaaaagcgactagagaaggaaaccggtaccaagataaaaattcatggaaccaaa
gcagatacagaggaaaaaggtgaaattaaaccaggtactgatgtccagtgcagttacaaa
gagatgcacgttaaaatatcagctgatagttttgataaagtggatgcagcaatttccatc
attgaactactaatttcctctgtaactgggaattcggctgctgattccacttctgtatct
gtttctggggacaacactaacgttccaaatcaaaaccaagacgccctcccatctcatgca
atttctctatctcaggaaaaccaggatgtgtttcaatcagcagccaatacacaaatgcaa
ggagatcgctttcaatactctggttcatggttttcagccgttcatacccctctatttgct
tcttctggcagcgtagtccctccaaatccaccgcaccttgctagaaatccccattttcca
ccacaaagaatgagcccttcaagtatgatttcagcttttggtgctcaacctgcacctgtt
gctgggttccacccgattattccaaatcagcagttttctatgcaagcaccaccaccaaca
caaatctttcagcattcacaatggactcaaacaactccttttggtcatgttgggccacca
agaaatccttctgtaatacctgcacagaatttgacagcaccaacaaatgcttcaatttca
tttccagcttcttttagccaaagccaaccaacaccaacaggacaactccagacactgacc
cctcacggcgtatcttctgaactgagtggaggacccgtcaatgttaaaatatctgtaggt
ctcagcaatatggggtctatggctccacaggcggttccccccaaaagacttgtttctcta
ggtccacaaccagatgtaccccagccaaatatgtcggtgatgccacgacctggcagcatt
catccacatcatgcgggaatgtcgcctagaccatcatcatctgtgggaccaataccagga
actgttcattcaactggaaaccatttatcaggaccgagaatgcctaattctgcctctcat
tacacccatgtaaaaccactggcctccatgccttcaaattctggcaattttacttttcaa
ggacagcggcccaatgcagactactatcaagcggttcccagaccaaacaatcaagctact
actcagggtggttcacaagagccaccttccggtccacggccaccaccatttggattttct
gtacctgatcagcctcttcaaagctttcaaaggacacaagtccccaaccaggtggatcca
actcaagcttatgtctctgctgctccttttgggggaagaccgggttctgtttcaattcca
cccagacaccccgcttttccctatgctggtcaaccttcaccaagatctcaagtcccacaa
atgggtatgaggaatttcattccttcccctcaaatgccaaacttactcagtcctggtgcc
caaagaggtatgcacaatcgacaaagctatcctgctcagggaacatggccagatattccg
atgagtcagaaatttggcaacaatccctccttggcgtccaataggccagcatattctgct
gaccaaatttatgatcccttttcaccaacatctgttgcacctccgcaccagaaaggtaat
cctggaaaatga
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