Trifolium pratense (red clover): 123906233
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Entry
123906233 CDS
T08949
Name
(RefSeq) ATP-dependent RNA helicase DEAH11, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123906233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123906233
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
123906233
Spliceosome [BR:
tpra03041
]
Complex C
Other components
Step II factors
123906233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
Helicase_C
OB_NTP_bind
IBR
DEAD
AAA_22
AAA_19
ResIII
Helicase_RecD
AAA_29
ABC_tran
AAA_30
Arc_MA
zf-RING_UBOX
RsgA_GTPase
Motif
Other DBs
NCBI-GeneID:
123906233
NCBI-ProteinID:
XP_045812055
LinkDB
All DBs
Position
LG2:complement(53830812..53837536)
Genome browser
AA seq
1729 aa
AA seq
DB search
MKKTFPPNYNPYFHRQPPHCPVYRHRKPGFHSNHRVDRPPERNSPHRPPNFILKLHLGRR
ALHRDDVECLIGKCKPNPDNFLFYPCDGVAASLNFIQWTDARDAVVWFWESRLSEGHDFT
PELISNVMVPSDRVELEGSLRRVFVSHVKELMEGKEVKRLVEEWDRLAKEIGSVVSLLGK
PFPIRVQQQNIQRKKGLDDEKSLVERRLKEFEFAMECILQHLGENNHADCGGDFVPVFKF
GESFDWGKIHSLIVRERRRLEDGLPIYAYRREILQQIHHQQITVLIGETGSGKSTQIVQF
LADSGIGADESIVCTQPRKIAAKSLAQRVQEESSGCYEESSIQCYSTFSSGDMFDSRIAF
MTDHCLLQQYMNDRNLSGVSCIIVDEAHERSLNTDLLLALIKNLLCKRVEIRLIIMSATA
DAKQLSDYFYGCGIFHVVGRNFPVEMRYVPADYGEHSGSAVVASYVFDVVKMATEIHKTE
EEGTILAFLTSQFDVEWACENFKAPSAVALPLHGKLSSEEQFHVFQNYAGKRKVIFSTNL
AETSITIPGVKYVIDSGLVKDCRFDPCSGMNVLKVCWISQSSANQRAGRAGRTEPGRCYR
MYSEADYQSMELNQEPEIRRVHLGVAVLKILALGVKNVQDFDFVDAPSPSSIEMAIRNLI
QLGFIKVNNNVHELTYEGRYLARMGIEPRHGKLILGCFKLALGREGIVLAAMMPNASNIF
CRFGNEDDKQRSDCLKVQFCHPDGDLFTLLSVYKEWEALPQDRRNKWCWENSINAKCMRR
CHDTVLELESFLEREHGFVVPSYWRWDPHTPSVHDKNMKKVILSSLAENVAMFSGRYQLG
YEVAQTGQHVHLHPSSSLLVFAQRPSWVVFGELLSVSNEYLVCVSAVDFESLNSLQPSPL
FDVSKMEERKLQMKTLTGFGTVLLKKFCGKLNSNLLGLVSRIRKACMDERISVEVNVDEN
LIKLYAASHDMDTASMFVNDVLEDEKKRLRVECTERYLYHGSGSSSPVALFGSGAEIKHL
ELEKHSLSVEVCHPNINAIDDKELLMFFEKNTSGCICSVYKFQGMVKDADDREKWGKITF
LSPDAAKRAVELNGEEFCGSSLKILPSQSAMGGDKTFSFPEVKAKIFWPRRPSKGFGILK
CDKNDVNFILRDFFNLAIGGRYVRCVPSNKSMDCIVISGLDRELSETEILDVLRTATSRR
ILDFFVVRGDAVGDPPCGACEEALYKEISPLMPKTNPHTSSCRVQVFPAEPKDSFKRALI
NFDGRLHLEAAKALEKIEGKVLPGCLSWQKIKCEQLFHSSLIFPAPVYHVIREQLEKILA
TFNNLNGLEWNLNRTATGSHRLKITANATKTVAEVRRRLEELSRGKIIEHDSLTPAALQL
LLSRDGISLKCSIQQETTTYIIFDRHNLNLRIFGSPDKIALAQQKLIQSLLSIHEKKQLV
IPLRGRNLPSDLMKQVVKNFGPDLHGLKEKVPGADLKLNTRQQSIFLHGNKELKPRVEEI
ALEIARSGHHLVERLDTGPSCPICLCDVENGYQLEGCGHLFCRLCLMEQCESAIKNQGSF
PICCAHKGCGDPILLTDFRTLLSNDKLDELFRASLGAFVASSSGSYRFCPSPDCPSIYRV
ADPDTASEPFICGACYSETCTKCHIEYHPYLSCERYRELKDDPDSSLKEWCKGKEQVKSC
FACGQIIEKIDGCNHVECKCGKHVCWVCLEIFTKSDECYDHLRTIHMTI
NT seq
5190 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaacctttcccccaaattacaacccttatttccaccgtcaaccaccgcactgt
cccgtttaccgtcaccggaagcctggatttcattccaaccaccgtgtcgatcgtcctcca
gaacgaaattcccctcaccgtcctcccaatttcattctcaagcttcatctcggccgtcgt
gctcttcatcgggatgatgtcgagtgtctcatcggtaaatgtaaacctaatcctgataat
ttccttttttacccctgcgatggtgttgctgcttcactcaatttcattcagtggacggat
gctcgtgatgctgtagtttggttttgggaatcgcgtctttctgaaggtcatgattttacg
ccggagttgatttcgaatgttatggtgccttctgatagggttgagcttgaaggtagtctt
aggagggtttttgttagtcatgtgaaggagttgatggaagggaaggaagtgaagagattg
gtggaggagtgggatcgattggcgaaggagattgggagtgttgtgagtttgttgggtaag
ccttttccaattagggttcagcaacagaatattcagagaaagaaagggcttgatgatgag
aagagtttagttgaaaggagattgaaggagtttgagtttgcaatggagtgcattttgcag
catcttggagagaataatcatgcggactgtggtggagattttgttcctgtgtttaagttt
ggtgaaagttttgattgggggaagattcacagtctcattgttagggaacgtcgcagactc
gaagacggattgcccatttatgcttaccggagggaaattcttcagcaaatacatcatcaa
cagataacagtgttgattggagagaccggttctgggaagagcactcagatagtgcagttt
cttgcggattccggcattggggctgatgagtcaattgtgtgcactcagcctcgcaagatt
gctgccaagtcattggcgcaaagggtccaggaagaaagtagtggatgttatgaagaaagt
tcaatccagtgttattctacattttcatccggcgacatgtttgattccaggatagcattc
atgacagatcactgtttattgcagcagtacatgaatgataggaatttgtctggggtctcg
tgtatcatagttgacgaggctcatgaaaggagcttaaatactgatctactgttggcgttg
ataaagaatttactttgtaagagggttgaaattcgacttatcataatgtctgctacagct
gatgcaaagcagctatctgattatttctatggttgtggaatttttcacgtggttgggaga
aacttccctgtggagatgagatatgttcctgctgactatggagaacattctggttctgct
gttgtggcgtcatatgtttttgatgttgtcaaaatggcaaccgagattcacaaaacagag
gaagaaggaactattctcgcctttctgacctcacagtttgacgtagaatgggcgtgtgaa
aattttaaagccccatctgcagttgctcttcccttgcatgggaagctttcgtctgaagag
caatttcatgttttccagaactatgctggaaaaaggaaagtgatattttcaacgaatctt
gcagagacatcaattacaattcctggtgttaagtatgtgatcgattctgggttggttaaa
gattgccgatttgatccttgcagtgggatgaatgtacttaaggtttgctggatcagccag
agctctgctaaccaaagggcaggtcgtgctgggaggactgagcctggcaggtgctatagg
atgtactcagaagctgattatcagtccatggagctaaatcaagaacctgagattcgaagg
gttcatcttggtgtagcagttttgaagatccttgctttaggggtgaagaatgtgcaggat
tttgattttgtggatgctccaagccctagctccattgagatggcgattaggaatctaatt
caattaggatttattaaagtgaacaataatgttcatgaactaacttatgaaggtaggtac
ttggcaagaatggggattgaacctaggcatggtaaacttattcttggctgtttcaaactt
gctttgggtagagagggcattgtccttgcagccatgatgcccaatgctagtaacatattt
tgcagatttggtaatgaagatgataaacaaagatctgattgtctcaaagtgcaattttgc
catcccgatggagacctttttactcttctctctgtgtacaaggaatgggaagctctgcca
caagataggaggaataaatggtgttgggaaaacagcatcaatgcaaaatgcatgaggaga
tgccatgacacagttttggagttagaatctttcctcgagcgtgaacatggctttgttgtt
ccaagttactggcgttgggacccccatacgccttctgttcatgataagaatatgaaaaag
gttatactgtcctcacttgctgaaaatgtagccatgttctctggacgctatcagcttggt
tatgaagtagcacaaacaggacagcatgttcacctgcatccatcttcttccttgctcgta
tttgctcagaggcctagttgggtagtttttggtgagcttctctcggtttctaatgaatat
ttggtctgtgtgagtgctgttgactttgaatcattaaacagccttcaaccttctcccttg
tttgatgtatccaagatggaagagcggaagttgcagatgaagacactgactggttttggc
actgttcttctaaagaaattttgtgggaaactcaacagtaatttgcttggtcttgtttca
cgtatcaggaaagcttgtatggatgaaagaatctctgttgaagtgaatgttgatgagaat
ctcatcaagttatatgctgcttcacatgatatggatacagctagtatgtttgtgaatgat
gttttagaagatgagaaaaagaggttacgcgttgaatgcacggaaagatatttgtatcat
gggtctggttcctcatcacccgtggccttgtttgggtctggtgctgagataaagcatttg
gaacttgagaaacattctttgagtgttgaagtgtgtcacccaaacataaatgcaattgat
gataaggagctcctgatgttttttgagaagaatacctcaggttgtatatgttctgtgtac
aagttccaaggcatggtaaaggatgctgatgatagagaaaagtggggcaagataacattt
ttgtcccctgatgctgccaaaagggctgttgagctgaatggagaagagttttgcggctcg
tccttgaaaatacttccttcacaatcagctatgggaggggataaaacattttcatttcct
gaagttaaagcaaaaatattttggcctcgtagacctagcaagggatttggcatacttaaa
tgtgataaaaatgatgtcaatttcatcttgagagatttttttaaccttgcaatcggaggg
aggtatgttcgctgtgtacccagtaataagtctatggattgtattgtgataagtgggctt
gacagagagctttcagaaactgaaattttagatgtactgagaactgctacaagtagaagg
attctggactttttcgtggtgaggggagatgctgttggagatccaccatgcggtgcctgc
gaagaggcactctataaagaaatttcccccttaatgcccaaaacaaatcctcatactagt
tcttgccgcgttcaggtatttccagctgagccaaaggattctttcaagagagctttaatt
aattttgatggaaggttgcacttagaggcagcaaaagctttggagaaaattgaaggaaag
gtgttgcccggatgtctttcatggcagaagataaagtgtgagcagttgtttcacagctcc
ttgatatttcctgctccagtctatcatgtgattagggaacaactggaaaaaatacttgca
accttcaacaatttaaacggtcttgagtggaacttaaacaggactgctactggctcccac
cgattgaagataacagccaatgccacaaagacagtggcagaagttaggagacgtctggaa
gaactgtctcgagggaaaatcattgagcacgacagcctcacccctgcagctctacagctc
ctgttgtccagagatggcattagtcttaaatgctcaatacagcaagagactacaacttat
attatttttgacaggcacaacctgaatttacggatttttggttcaccagataagattgct
ttggctcagcagaaattaattcaatctctattgtccatccatgaaaaaaagcagttagta
atccctctgagagggaggaacctaccttctgacttaatgaagcaagtggtcaagaatttt
gggccagatcttcatggactaaaagagaaggttcctggagctgatcttaaacttaacaca
cggcaacagtcgatctttcttcatggtaacaaggagttgaaaccaagagtagaggaaata
gctcttgagattgcccgttcaggccatcatttagttgagagacttgacacaggacccagt
tgcccaatttgcttgtgtgatgttgagaatggatatcaacttgaaggctgtggtcatttg
ttctgccggctgtgtctgatggagcagtgtgaatctgctataaaaaaccaaggcagtttc
ccaatatgttgtgctcacaagggctgtggagatcctattctgcttacagatttcagaact
ctcctgtcaaatgataagttggatgaacttttcagggcatctttgggagcttttgtagct
tcaagttcgggaagttataggttttgcccttcgcctgactgcccctcaatttatcgagtt
gcagatcccgacacagctagtgagccatttatttgcggggcatgttattcagagacttgt
accaagtgtcacatagagtatcatccatacctttcgtgtgagagataccgagagctcaag
gatgacccagactcatctctgaaggagtggtgtaaagggaaagaacaagtcaagagctgt
tttgcttgtgggcaaataattgagaagattgatgggtgcaatcacgttgagtgcaagtgc
ggaaagcatgtctgctgggtttgcttggaaatcttcacaaaaagtgatgaatgctatgat
catttgagaactatacacatgaccatataa
DBGET
integrated database retrieval system
