Trifolium pratense (red clover): 123906612
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Entry
123906612 CDS
T08949
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 46
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
123906612
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tpra03041
]
123906612
03009 Ribosome biogenesis [BR:
tpra03009
]
123906612
Enzymes [BR:
tpra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
123906612
Spliceosome [BR:
tpra03041
]
Complex A
U1 snRNP components
U1 related factors
123906612
Complex B
123906612
Ribosome biogenesis [BR:
tpra03009
]
Eukaryotic type
Pre-60S particles
Helicases
123906612
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
WW
ERCC3_RAD25_C
AAA_19
Motif
Other DBs
NCBI-GeneID:
123906612
NCBI-ProteinID:
XP_045812515
LinkDB
All DBs
Position
LG2:6240934..6246369
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AA seq
742 aa
AA seq
DB search
MAATATASVGPRYAPPDPTLPKPWKGLVDGKTGYLYFWNPETNITQYERPSSSAAPPKSS
SVPNSSVQVQQSSQGRGRSPDFSDRYDRNGNGGSNEGGSRNHQSSKGATSQDNVANGNVS
SIKAHVAPDTGPALSPEAYRRRHEITVTGDNVPAPVTSFASSGFPSEILREVQNAGFSAP
TPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNAKMGPTVLVLSPTRE
LATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRIT
LHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPARRQTLMFTATWPKEVRRIAADLLVNPV
QVNIGNVDELVANKSITQHIEVLAHMEKQRRLESILRSQDQGSKIIIFCSTKKMCDQLAR
NLTRQFGAAAIHGDKSQADRDHVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNYDFPT
GVEDYVHRIGRTGRAGATGIAYTFFGDQDAKHASDLIKILEGANQKVPAELRELSSRGGG
GFSRSKYRSGGRGDSGFGAKSYDSGYGGRSNDAGYGGRGSDSNYGGRGGYGSSAAFGRGG
GRGFDYDSQRNERDRSPERGSSWSDRFKTVNRERSRSPAKAAPSQNGPVSFHQAMMQRSG
GGGDRNKSFNRERSRSPAGRERSPSSPGGGRSNNSPKKGWGGSSGDGRNGGSHSYNGEME
EGMIPDEEGMIGHDDSTYQSAN
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atggctgctacagcaactgcctcagtgggtccccggtatgcaccacctgatcccacactt
cctaaaccatggaagggtcttgtggatggcaagactggctatctttacttttggaatcct
gagactaatatcactcagtatgagaggccttcgagctccgctgccccaccgaagtcttct
tcagtccctaactcttctgtccaggttcagcaatcatctcaaggacgtggtcgtagtcct
gatttcagtgataggtatgataggaatggaaatggtgggtcaaatgaaggtggatccagg
aaccatcagagttccaaaggtgccacctctcaagataatgttgcaaatggaaatgttagt
tctatcaaagctcatgtggcaccagatacaggacctgcattatctccagaggcttataga
cgtcgtcatgagatcactgttacgggagataatgttcctgctcccgtgacatcatttgca
tcctctggctttccatctgagattcttagagaggtacaaaatgctgggttctcagcccca
actccaattcaggcacaatcatggcccattgcccttcaaagtaaagatatagttgccatt
gctaaaacaggttcaggaaaaaccttggggtatttgcttccagcatttattcatctcaag
cgtactaataataacgccaaaatgggccccactgttttggtactttcaccaacaagggag
ttggcaacacagattcaagatgaagctgtgaagtttagtaaaacatcaagaattgcctgc
acttgcttgtatggaggagcaccaaagggtcctcaattgagagatattgaccgtggagca
gatattgtggtagccactcctggtcgcctgaatgatattcttgagatgaggagaatcacg
cttcaccaggtctcttacctagtgctagatgaggcagaccggatgctggacatgggtttt
gaacctcaaattaggaagattgtgaatgaggtgcccgctcgcaggcaaactctcatgttt
actgcaacatggcctaaggaggttaggagaattgcagctgatctgctggtcaatcctgtc
caagtgaacattggcaatgtagacgagcttgttgctaacaaatccatcactcagcatatt
gaagttttggcacatatggagaaacagagacgactggaaagtattttgcggtcacaggat
caaggatcaaagataattattttttgttctaccaagaaaatgtgtgatcaacttgctcgt
aatcttacacgccagtttggagctgctgctatacatggggataaatcccaagctgatagg
gatcatgtgttgaatcagtttcgaagtggaaggactcctgtgcttgtagccacagatgtt
gcagctcgtggactggatgtgaaagacattagagtggttgtcaactatgacttccctaca
ggagtggaggattatgttcataggattggaaggactggtagggctggagccactggtata
gcttacactttctttggggaccaggatgctaaacatgcttcagatctcataaaaatctta
gagggtgcaaaccagaaagtccctgcagaacttcgtgagttgtcatcccggggtggtggt
gggtttagcaggtccaaatatcgttctggtggtcgtggtgattctggatttggtgcaaag
agttatgactctgggtatggtggaaggagtaatgatgcaggatatggtggaagaggtagt
gattcaaattatggtggaaggggtggatatgggtcttctgctgcttttggaagaggtgga
ggccgtggatttgactatgactcacagaggaatgaaagagatcgaagccctgagagagga
tctagctggagtgatcgcttcaaaactgtcaatcgcgaacgcagccgcagtcctgccaag
gctgcaccatctcaaaatggcccagtcagctttcaccaagcaatgatgcaacgcagtgga
ggaggtggcgatcgtaacaagagctttaaccgggagcgaagtcgcagtccggcaggccgt
gaacgatccccttcttcccctggtggcggtaggtccaacaacagtccaaagaaagggtgg
ggaggatcttcaggtgatggaagaaacggtggttctcattcatacaatggagaaatggag
gaagggatgattcctgatgaagaaggaatgattggtcatgatgattctacatatcaaagt
gcaaattag
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