Trifolium pratense (red clover): 123906873
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Entry
123906873 CDS
T08949
Name
(RefSeq) polygalacturonase At1g48100 isoform X1
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
tpra
Trifolium pratense (red clover)
Pathway
tpra00040
Pentose and glucuronate interconversions
tpra01100
Metabolic pathways
Module
tpra_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
tpra00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
123906873
Enzymes [BR:
tpra01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
123906873
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GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
123906873
NCBI-ProteinID:
XP_045812843
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Position
LG2:20029851..20033914
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AA seq
458 aa
AA seq
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MKQNKSFSQLFFMSLLMLMVYVDARKTNMKKKLHKHPKESHPLPHFDPHPTQLNTFDVMS
FGAKGNGVSDDSEAFLAAWKCACKVSGATIKVPAKFNFLIKPITLQGPCMPDLTLQIDGT
ILAPSEVSSWPKSSLFQWINFKWLQNFTIKGYGTINGQGSNWWTSSELYDIQVKKKTHSK
QIPSMKPTAIRFYSSNLIKIIDIKIINSPLCHLKFDNSKGIKVDNITISSPENSPNTDGI
HLQNTHDVEIQHSNIGTGDDCVSIQTGCSNIHVHHIKCGPGHGISLGGLGKDKSVACVSD
IIVEDISMKNTLYGARIKTWQGGNGMVKNVTFSRIKVYDVMFPIMIDQYYCDKQICKNQT
GTVVISGVKFDQISGSYSVQPVHLACSNSIPCTDVDLTDIQLRPSLKYRGYQQAMCWNSY
GKSQGQLVPSSIDYCLRSGGGLIKKIAKSHDSVCYKLF
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaaacaaaagtttttctcaactctttttcatgtccttattaatgcttatggtt
tatgtggatgcaaggaagactaacatgaagaaaaaacttcacaaacatcccaaagaatca
catcctcttcctcattttgatcctcatccaacacaactaaacacttttgatgttatgtct
tttggtgcaaaaggcaatggcgtttctgatgattcagaggcatttctagctgcatggaaa
tgtgcatgcaaagtttctggtgcaacaatcaaagttccagcaaaattcaacttcctcatt
aagcctattactttacaaggcccttgtatgcctgatcttacacttcagatagatggaaca
atattggctccttcagaagtatcttcatggccaaaatccagtttgtttcagtggataaat
ttcaaatggttgcagaactttactatcaaaggttatggcactattaatggtcaaggctct
aattggtggacctcctcagaactttatgatatacaggtaaaaaaaaaaactcactctaag
caaattccaagcatgaagccaaccgctataagattctactctagcaaccttataaagatt
atagatatcaaaatcataaacagtcctctatgtcatcttaaatttgacaattcaaaggga
atcaaagttgataatattacaatatcttcccctgaaaatagcccaaacactgatggaatt
cacttgcaaaacacacatgatgtagaaattcaacattctaatattggaactggagatgac
tgtgtgtccatccaaactggttgttctaatattcatgtccaccacattaaatgtggccct
ggtcatggcataagtttaggaggattaggaaaagacaagagtgtggcatgcgtatctgac
atcattgttgaggacatttctatgaaaaatactctgtatggagcaaggatcaaaacatgg
cagggaggcaatggtatggtaaaaaatgtaacattttcaagaattaaagtgtatgatgtt
atgtttccaataatgatagaccaatactattgtgacaaacaaatctgcaagaaccaaaca
ggaacagtggtaatttctggtgttaaatttgatcaaataagtggtagttattcagtgcag
ccagtccacctagcttgcagcaattccataccatgtacagatgttgatttaactgacatt
cagttaaggccttcccttaaatatagaggttaccaacaagctatgtgttggaattcttat
ggaaaatcacaaggtcaattggtaccttcaagtattgattattgtttgagaagtggtggt
ggattaataaagaagatagcaaagtcacatgatagtgtgtgttataaattgttttaa
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